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AT1G76130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.928
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha-amylase-like 2
Curator
Summary (TAIR10)
alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.
Computational
Description (TAIR10)
alpha-amylase-like 2 (AMY2); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity, calcium ion binding; INVOLVED IN: carbohydrate metabolic process, glycogen catabolic process; LOCATED IN: extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 13 (InterPro:IPR006046), Alpha-amylase, plant (InterPro:IPR013775), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047), Alpha-amylase, C-terminal beta-sheet (InterPro:IPR012850); BEST Arabidopsis thaliana protein match is: alpha-amylase-like 3 (TAIR:AT1G69830.1); Has 2455 Blast hits to 2450 proteins in 882 species: Archae - 39; Bacteria - 1348; Metazoa - 171; Fungi - 337; Plants - 494; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G76130-MONOMERCAZy:GH13EC:3.2.1.1eggNOG:COG0366eggNOG:KOG0471EMBL:AC009978EMBL:AK221564
EMBL:AY084871EMBL:BT025560EMBL:CP002684EnsemblPlants:AT1G76130EnsemblPlants:AT1G76130.1entrez:843945Gene3D:2.60.40.1180
Gene3D:3.20.20.80GeneID:843945Genevisible:Q8LFG1GO:GO:0004556GO:GO:0005509GO:GO:0005576GO:GO:0005829
GO:GO:0005975Gramene:AT1G76130.1gramene_pathway:3.2.1.1gramene_pathway:PWY-842hmmpanther:PTHR10357hmmpanther:PTHR10357:SF118HOGENOM:HOG000239525
InParanoid:Q8LFG1InterPro:IPR006046InterPro:IPR006047InterPro:IPR012850InterPro:IPR013775InterPro:IPR013780InterPro:IPR013781
InterPro:IPR015902InterPro:IPR017853KEGG:00500+3.2.1.1KEGG:ath:AT1G76130KO:K01176OMA:INWIDGAPANTHER:PTHR10357
PaxDb:Q8LFG1Pfam:PF00128Pfam:PF07821Pfam:Q8LFG1PhylomeDB:Q8LFG1PIR:C96789PIRSF:PIRSF001028
PRIDE:Q8LFG1PRINTS:PR00110PRO:PR:Q8LFG1ProteinModelPortal:Q8LFG1Proteomes:UP000006548RefSeq:NP_177740.1SMART:SM00642
SMART:SM00810SMR:Q8LFG1STRING:3702.AT1G76130.1SUPFAM:SSF51011SUPFAM:SSF51445TAIR:AT1G76130tair10-symbols:AMY2
tair10-symbols:ATAMY2UniGene:At.34701UniProt:Q8LFG1
Coordinates (TAIR10) chr1:+:28561647..28563914
Molecular Weight (calculated) 47172.30 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.52
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYYNNVFDE CNDQTDIGRV IRDGREVILQ AYNWESHKYD WWRNLDGKVP DIAKSGFTSA WLPPPSQSLA PEGYLPQDLY SLNSAYGSEH LLKSLLRKMK
101: QYKVRAMADI VINHRVGTTR GHGGMYNRYD GISLPWDEHA VTSCTGGLGN RSTGDNFNGV PNVDHTQHFV RKDIIGWLRW LRNTVGFQDF RFDFARGYSA
201: NYVKEYIGAA KPLFSVGECW DSCNYNGHGL DYNQDSHRQR IISWIDATGQ ISAAFDFTTK GILQEAVKGQ YWRLCDAQGK PPGVMGWWPS RAVTFLDNHD
301: TGSTQAHWPF PSHHVMEGYA YILTHPGIPC VFYDHFYDWG SSIHDQIVKL IDIRRRQDIH SRSTVRVLKA ESNLYAAIVG EKICMKLGDG SWCPSGRDWT
401: LATSGHRYAV WHK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)