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AT1G76110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G04880.1); Has 3338 Blast hits to 2805 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2430; Fungi - 276; Plants - 321; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Protein Annotations
BioGrid:29162eggNOG:ENOG410Y2APeggNOG:KOG0381eggNOG:KOG2744EMBL:AC009978EMBL:AY099630EMBL:BT008823
EMBL:CP002684EnsemblPlants:AT1G76110EnsemblPlants:AT1G76110.1entrez:843943Gene3D:1.10.150.60Gene3D:1.10.30.10GeneID:843943
Genevisible:Q9SGS2GO:GO:0000741GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0010197Gramene:AT1G76110.1hmmpanther:PTHR13711hmmpanther:PTHR13711:SF202HOGENOM:HOG000243289InParanoid:Q9SGS2IntAct:Q9SGS2
InterPro:IPR001606InterPro:IPR009071KEGG:ath:AT1G76110OMA:RKWREVMPaxDb:Q9SGS2Pfam:PF00505Pfam:PF01388
Pfam:Q9SGS2Pfscan:PS50118Pfscan:PS51011PhylomeDB:Q9SGS2PIR:B96789PRIDE:Q9SGS2PRO:PR:Q9SGS2
PROSITE:PS50118PROSITE:PS51011ProteinModelPortal:Q9SGS2Proteomes:UP000006548RefSeq:NP_177738.1SMART:SM00398SMART:SM00501
SMR:Q9SGS2STRING:3702.AT1G76110.1SUPFAM:SSF46774SUPFAM:SSF47095TAIR:AT1G76110UniGene:At.43665UniProt:Q9SGS2
Coordinates (TAIR10) chr1:-:28555287..28557465
Molecular Weight (calculated) 38776.30 Da
IEP (calculated) 10.05
GRAVY (calculated) -0.60
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDNESTPS QATVEMMATS PAKIKEYPEP LALHEVVVKD SSVFWDTLRR FHSIMSTKFM IPVIGGKELD LHVLYVEVTR RGGYEKVVVE KKWREVGGVF
101: RFSATTTSAS FVLRKHYLNL LFHYEQVHLF TARGPLLHPI ATFHANPSTS KEMALVEYTP PSIRYHNTHP PSQGSSSFTA IGTIEGKFDC GYLVKVKLGS
201: EILNGVLYHS AQPGPSSSPT AVLNNAVVPY VETGRRRRRL GKRRRSRRRE DPNYPKPNRS GYNFFFAEKH CKLKSLYPNK EREFTKLIGE SWSNLSTEER
301: MVYQDIGLKD KERYQRELNE YRETLRLRDG DMTNGKAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)