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AT1G76100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastocyanin 1
Curator
Summary (TAIR10)
One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions.
Computational
Description (TAIR10)
plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3794eggNOG:ENOG410IY43EMBL:AC009978EMBL:AK226194EMBL:BT021977EMBL:BT025525EMBL:CP002684
EMBL:M20937EMBL:Z83321EnsemblPlants:AT1G76100EnsemblPlants:AT1G76100.1entrez:843942Gene3D:2.60.40.420GeneID:843942
Genevisible:P11490GO:GO:0005507GO:GO:0009055GO:GO:0009507GO:GO:0009535GO:GO:0009579GO:GO:0031977
GO:GO:0055114Gramene:AT1G76100.1hmmpanther:PTHR34192hmmpanther:PTHR34192:SF2HOGENOM:HOG000209447InParanoid:P11490InterPro:IPR000923
InterPro:IPR001235InterPro:IPR002387InterPro:IPR008972InterPro:IPR028871KEGG:ath:AT1G76100KO:K02638OMA:NHEEYAN
PaxDb:P11490Pfam:P11490Pfam:PF00127PhylomeDB:P11490PIR:JA0065PRIDE:P11490PRINTS:PR00156
PRINTS:PR00157PRO:PR:P11490PROSITE:PS00196ProteinModelPortal:P11490Proteomes:UP000006548RefSeq:NP_177737.1scanprosite:PS00196
SMR:P11490STRING:3702.AT1G76100.1SUPFAM:SSF49503TAIR:AT1G76100tair10-symbols:PETE1TIGRfam:TIGR02656TIGRFAMs:TIGR02656
TMHMM:TMhelixUniGene:At.19893UniProt:P11490
Coordinates (TAIR10) chr1:-:28554217..28554732
Molecular Weight (calculated) 17590.10 Da
IEP (calculated) 5.75
GRAVY (calculated) 0.22
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAITSATVT IPSFTGLKLA VSSKPKTLST ISRSTSATRA PPKLALKSSL KDFGVIAVAT AASIVLAGNA MAMEVLLGSD DGSLAFVPSE FTVAKGEKIV
101: FKNNAGFPHN VVFDEDEIPS GVDASKISMD ETALLNGAGE TYEVTLTEPG SYGFYCAPHQ GAGMVGKLTV K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)