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AT1G76070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J04DeggNOG:ENOG410YQZKEMBL:AC007396EMBL:AC009978EMBL:AK228131EMBL:AY087903EMBL:BT003120
EMBL:CP002684EnsemblPlants:AT1G76070EnsemblPlants:AT1G76070.1entrez:843939GeneID:843939Genevisible:Q9SGS5GO:GO:0005886
Gramene:AT1G76070.1hmmpanther:PTHR34779HOGENOM:HOG000148644InParanoid:Q9SGS5iPTMnet:Q9SGS5KEGG:ath:AT1G76070OMA:MVSIVPP
PaxDb:Q9SGS5Pfam:Q9SGS5PhylomeDB:Q9SGS5PRIDE:Q9SGS5PRO:PR:Q9SGS5Proteomes:UP000006548RefSeq:NP_565125.1
STRING:3702.AT1G76070.1SwissPalm:Q9SGS5TAIR:AT1G76070UniGene:At.34705UniProt:Q9SGS5
Coordinates (TAIR10) chr1:+:28546617..28547435
Molecular Weight (calculated) 30288.00 Da
IEP (calculated) 10.33
GRAVY (calculated) -0.82
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MDIKHHTSTS KPKNKNKLLK MLPKAMSFGH RVPPFSPGRD LHHNNHHNYT AANKMFFSGP MVPLVPNAAR VRRNKSDAVW DEPTSPKVSC IGQIKLGKSK
101: CPTGKKNKAP SSLIPKISKT STSSLTKEDE KGRLSKIKSI FSFSPASGRN TSRKSHPTAV SAADEHPVTV VSTAAVPSLG QMKKFASSRD ALGDFDWAVE
201: MKHEEESPAD HHRGYYSDDD TRGAYLRYDD DEDEDDIIIP FSAPLGLKPK KEVNLWKRRT MDPPKPLHLQ TI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)