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AT1G75900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT1G75880.2); Has 3444 Blast hits to 3405 proteins in 204 species: Archae - 0; Bacteria - 282; Metazoa - 0; Fungi - 26; Plants - 3125; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G75900-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IM4S
EMBL:AC007396EMBL:AK117131EMBL:AY028611EMBL:CP002684
EnsemblPlants:AT1G75900EnsemblPlants:AT1G75900.1entrez:843923Gene3D:3.40.50.1110
GeneID:843923Genevisible:Q94CH6GO:GO:0005576GO:GO:0016042
GO:GO:0016298Gramene:AT1G75900.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF184
HOGENOM:HOG000237650InParanoid:Q94CH6InterPro:IPR001087InterPro:IPR008265
InterPro:IPR013830KEGG:ath:AT1G75900OMA:YGKDLNGPaxDb:Q94CH6
Pfam:PF00657Pfam:Q94CH6PhylomeDB:Q94CH6PIR:A96788
PRIDE:Q94CH6PRO:PR:Q94CH6PROSITE:PS01098ProteinModelPortal:Q94CH6
Proteomes:UP000006548RefSeq:NP_177718.1scanprosite:PS01098STRING:3702.AT1G75900.1
TAIR:AT1G75900UniGene:At.15393UniProt:Q94CH6
Coordinates (TAIR10) chr1:+:28499179..28500943
Molecular Weight (calculated) 39817.90 Da
IEP (calculated) 5.47
GRAVY (calculated) 0.12
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDNSSWSCS CSWSSWKICL LSVLFLTETI TAVKLPPKLI IPAVIAFGDS IVDTGMNNNV KTVVKCDFLP YGINFQSGVA TGRFCDGRVP ADLLAEELGI
101: KSIVPAYLDP NLKSKDLLTG VSFASGGSGY DPITPKLVAV ISLEDQLSYF EEYIEKVKNI VGEARKDFIV ANSLFLLVAG SDDIANTYYT LRARPEYDVD
201: SYTTLMSDSA SEFVTKLYGY GVRRVAVFGA PPIGCVPSQR TLGGGILRDC ADNYNEAAKL FNSKLSPKLD SLRKTLPGIK PIYINIYDPL FDIIQNPANY
301: GFEVSNKGCC GTGAIEVAVL CNKITSSVCP DVSTHVFWDS YHPTEKTYKV LVSLLINKFV NQFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)