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AT1G75860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits to 235 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4CQeggNOG:ENOG410ZMW4EMBL:CP002684EnsemblPlants:AT1G75860EnsemblPlants:AT1G75860.1entrez:843919GeneID:843919
Gramene:AT1G75860.1hmmpanther:PTHR34660hmmpanther:PTHR34660:SF1InParanoid:F4I0P9iPTMnet:F4I0P9KEGG:ath:AT1G75860ncoils:Coil
OMA:AHRIEKKPaxDb:F4I0P9PRIDE:F4I0P9ProteinModelPortal:F4I0P9Proteomes:UP000006548RefSeq:NP_177714.2STRING:3702.AT1G75860.1
TAIR:AT1G75860UniGene:At.19823UniProt:F4I0P9
Coordinates (TAIR10) chr1:-:28484255..28485743
Molecular Weight (calculated) 33392.80 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.82
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRVLTCPPL VFARNHVGVQ NLVESTKLKR ITLDSKKAHR IEKKEKKEKR KEKKETKREK SHKHSIKATD NHHKLIFLPS KKVSDESDSL EKSGLTDELE
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)