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AT1G75850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : VPS35 homolog B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS35 homolog B (VPS35B); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35 homolog A (TAIR:AT2G17790.1); Has 618 Blast hits to 508 proteins in 209 species: Archae - 0; Bacteria - 1; Metazoa - 191; Fungi - 219; Plants - 72; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
BioGrid:29137eggNOG:ENOG410XNXCeggNOG:KOG1107EMBL:AC007396EMBL:AK228153EMBL:CP002684EnsemblPlants:AT1G75850
EnsemblPlants:AT1G75850.1entrez:843918GeneID:843918Genevisible:F4I0P8GO:GO:0005770GO:GO:0005794GO:GO:0006886
GO:GO:0008565GO:GO:0030904GO:GO:0031902GO:GO:0042147Gramene:AT1G75850.1hmmpanther:PTHR11099hmmpanther:PTHR11099:SF1
HOGENOM:HOG000196946InParanoid:F4I0P8IntAct:F4I0P8InterPro:IPR005378InterPro:IPR016024KEGG:ath:AT1G75850ncoils:Coil
OMA:LVEENEHPANTHER:PTHR11099PaxDb:F4I0P8Pfam:F4I0P8Pfam:PF03635PIR:G96787PIRSF:PIRSF009375
PRIDE:F4I0P8PRO:PR:F4I0P8ProteinModelPortal:F4I0P8Proteomes:UP000006548RefSeq:NP_177713.3SMR:F4I0P8STRING:3702.AT1G75850.1
SUPFAM:SSF48371TAIR:AT1G75850tair10-symbols:VPS35BUniGene:At.25499UniGene:At.49319UniProt:F4I0P8
Coordinates (TAIR10) chr1:-:28478053..28483874
Molecular Weight (calculated) 89450.50 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.11
Length 790 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)