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AT1G75800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pathogenesis-related thaumatin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G20030.2); Has 1631 Blast hits to 1621 proteins in 190 species: Archae - 2; Bacteria - 41; Metazoa - 64; Fungi - 79; Plants - 1416; Viruses - 4; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGT6eggNOG:ENOG4111GDHEMBL:AC007396EMBL:AY074577EMBL:AY094013EMBL:CP002684EnsemblPlants:AT1G75800
EnsemblPlants:AT1G75800.1entrez:843913Gene3D:2.60.110.10GeneID:843913Gramene:AT1G75800.1hmmpanther:PTHR31048hmmpanther:PTHR31048:SF27
HOGENOM:HOG000238454InterPro:IPR001938InterPro:IPR017949KEGG:ath:AT1G75800OMA:PSSYSLMPANTHER:PTHR31048Pfam:PF00314
Pfscan:PS51367PhylomeDB:Q9LQT4PIR:D96787PRINTS:PR00347PROSITE:PS00316PROSITE:PS51367Proteomes:UP000006548
RefSeq:NP_177708.1scanprosite:PS00316SMART:SM00205SMR:Q9LQT4STRING:3702.AT1G75800.1SUPFAM:SSF49870TAIR:AT1G75800
UniGene:At.20871UniProt:Q9LQT4
Coordinates (TAIR10) chr1:+:28458889..28460447
Molecular Weight (calculated) 34885.90 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.14
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MALPLPLIFL IFSHLFVSGV RSTSFIMVNK CEYTVWPGLL SNAGVPPLPT TGFVLQKGEE RTISAPTSWG GRFWGRTQCS TDTDGKFTCL TGDCGSGTLE
101: CSGSGATPPA TLAEFTLDGS NGLDFYDVSL VDGYNVPMLV APQGGSGLNC SSTGCVVDLN GSCPSELKVT SLDGRGKQSM GCKSACEAFR TPEYCCSGAH
201: GTPDTCKPSS YSLMFKTACP RAYSYAYDDQ SSTFTCAESP NYVITFCPTP NTSQKSSQDQ SPDPKPTTPT GTSSTTPAGD SSTTWSPVDT SMIYEGALDQ
301: NKGSPSTCHL SLCGITVTLA LAFCRMWRLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)