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AT1G75750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GAST1 protein homolog 1
Curator
Summary (TAIR10)
GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data
Computational
Description (TAIR10)
GAST1 protein homolog 1 (GASA1); CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G18420.1); Has 473 Blast hits to 473 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 473; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:29127eggNOG:ENOG410J4WVeggNOG:ENOG410YWQ9EMBL:AC006434
EMBL:AF462801EMBL:CP002684EMBL:U11766EMBL:Z29940
EnsemblPlants:AT1G75750EnsemblPlants:AT1G75750.1entrez:843908ExpressionAtlas:P46689
GeneID:843908Genevisible:P46689GO:GO:0005576GO:GO:0005618
GO:GO:0009505GO:GO:0009737GO:GO:0009739GO:GO:0009740
GO:GO:0009741GO:GO:0009826hmmpanther:PTHR23201hmmpanther:PTHR23201:SF2
HOGENOM:HOG000240234InParanoid:P46689IntAct:P46689InterPro:IPR003854
OMA:CGSACVAPaxDb:P46689Pfam:P46689Pfam:PF02704
PhylomeDB:P46689PIR:A96787PIR:S60229PRIDE:P46689
PRO:PR:P46689ProteinModelPortal:P46689Proteomes:UP000006548RefSeq:NP_565116.1
STRING:3702.AT1G75750.1TAIR:AT1G75750tair10-symbols:GASA1UniGene:At.24501
UniProt:P46689
Coordinates (TAIR10) chr1:-:28441813..28442284
Molecular Weight (calculated) 10745.30 Da
IEP (calculated) 9.28
GRAVY (calculated) -0.16
Length 98 amino acids
Sequence (TAIR10)
(BLAST)
1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)