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AT1G75690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DnaJ/Hsp40 cysteine-rich domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DnaJ/Hsp40 cysteine-rich domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 581 Blast hits to 563 proteins in 197 species: Archae - 4; Bacteria - 299; Metazoa - 12; Fungi - 21; Plants - 163; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Protein Annotations
BioGrid:29122EC:5.3.4.1eggNOG:ENOG410IX20eggNOG:ENOG4111Q7UEMBL:AC006434EMBL:AK117868EMBL:BT002378
EMBL:BT006547EMBL:CP002684EnsemblPlants:AT1G75690EnsemblPlants:AT1G75690.1entrez:843903Gene3D:2.10.230.10GeneID:843903
Genevisible:Q8GSJ6GO:GO:0003756GO:GO:0006457GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009570
GO:GO:0010206GO:GO:0016021GO:GO:0046872Gramene:AT1G75690.1hmmpanther:PTHR15852hmmpanther:PTHR15852:SF27HOGENOM:HOG000083374
InParanoid:Q8GSJ6IntAct:Q8GSJ6InterPro:IPR001305KEGG:ath:AT1G75690OMA:NCEGIGSPaxDb:Q8GSJ6Pfam:Q8GSJ6
PhylomeDB:Q8GSJ6PRIDE:Q8GSJ6PRO:PR:Q8GSJ6ProteinModelPortal:Q8GSJ6Proteomes:UP000006548RefSeq:NP_177698.1SMR:Q8GSJ6
STRING:3702.AT1G75690.1SUPFAM:SSF57938TAIR:AT1G75690TMHMM:TMhelixUniGene:At.34746UniProt:Q8GSJ6
Coordinates (TAIR10) chr1:-:28422273..28423170
Molecular Weight (calculated) 16335.30 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.26
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVSAPSPPR LHSPFIHCPI NFTPSSFSAR NLRSPSTSYP RIKAELDPNT VVAISVGVAS VALGIGIPVF YETQIDNAAK RENTQPCFPC NGTGAQKCRL
101: CVGSGNVTVE LGGGEKEVSN CINCDGAGSL TCTTCQGSGV QPRYLDRREF KDDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)