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AT1G75670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.587
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-directed RNA polymerases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-directed RNA polymerases; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576); Has 67 Blast hits to 67 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 48; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
DNASU:843901eggNOG:ENOG410IW4DeggNOG:ENOG4111X1QEMBL:AY150401EMBL:CP002684EnsemblPlants:AT1G75670EnsemblPlants:AT1G75670.1
EnsemblPlants:AT1G75670.2entrez:843901GeneID:843901GO:GO:0003899GO:GO:0006351Gramene:AT1G75670.1Gramene:AT1G75670.2
hmmpanther:PTHR12709hmmpanther:PTHR12709:SF5HOGENOM:HOG000243004InterPro:IPR005576KEGG:ath:AT1G75670OMA:EVMHIAGPfam:PF03876
PhylomeDB:Q8H1F8Proteomes:UP000006548RefSeq:NP_565115.1RefSeq:NP_974148.1STRING:3702.AT1G75670.1TAIR:AT1G75670UniGene:At.26550
UniProt:Q8H1F8
Coordinates (TAIR10) chr1:-:28415378..28416505
Molecular Weight (calculated) 22287.10 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.21
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGLKLSEAE LMIFIHPSQS RNVFQGICRE LSSLLFQYNE TFDGVLLAYD ATVKSKQAKI LTGLHPYFGV RVNTRLLLFD PKPKSFVEGK IVKISPESIH
101: VIVLGFSAAV ITDVDIREEF KYRVRDGEGS FVSRSHKRHA LKLGTMLRLQ VQSFDEEVMH IAGSLLPENT GCVKWLEKKS EEALPTDRDH KRRKLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)