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AT1G75630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.500
vacuole 0.500
ASURE: plasma membrane,vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
Curator
Summary (TAIR10)
vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA,
Computational
Description (TAIR10)
vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (AVA-P4); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT1G19910.1); Has 2720 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 466; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
Protein Annotations
BioGrid:29117eggNOG:COG0636eggNOG:KOG0232EMBL:AC006434EMBL:AF153677EMBL:AF424574EMBL:AY098985
EMBL:CP002684EMBL:L44584EnsemblPlants:AT1G75630EnsemblPlants:AT1G75630.1entrez:843898ExpressionAtlas:P59229GeneID:843898
Genevisible:P59229GO:GO:0005774GO:GO:0015078GO:GO:0015991GO:GO:0016021GO:GO:0033179hmmpanther:PTHR10263
hmmpanther:PTHR10263:SF13InParanoid:P59229IntAct:P59229InterPro:IPR000245InterPro:IPR002379InterPro:IPR011555PaxDb:P59229
Pfam:P59229Pfam:PF00137PhylomeDB:P59229PIR:S60131PRIDE:P59229PRINTS:PR00122PRO:PR:P59229
ProteinModelPortal:P59229Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_177693.1SMR:P59229STRING:3702.AT1G19910.1
SUPFAM:0035882SUPFAM:SSF81333TAIR:AT1G75630tair10-symbols:AVA-P4TCDB:3.A.2.2.5TIGRfam:TIGR01100TIGRFAMs:TIGR01100
TMHMM:TMhelixUniGene:At.6076UniProt:P59229
Coordinates (TAIR10) chr1:+:28400662..28402032
Molecular Weight (calculated) 16686.80 Da
IEP (calculated) 8.68
GRAVY (calculated) 0.95
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSGFSGDE TAPFFGFLGA AAALVFSCMG AAYGTAKSGV GVASMGVMRP ELVMKSIVPV VMAGVLGIYG LIIAVIISTG INPKAKSYYL FDGYAHLSSG
101: LACGLAGLSA GMAIGIVGDA GVRANAQQPK LFVGMILILI FAEALALYGL IVGIILSSRA GQSRAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)