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AT1G75520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SHI-related sequence 5
Curator
Summary (TAIR10)
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Computational
Description (TAIR10)
SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8TWeggNOG:ENOG410YDRXEMBL:AC006434EMBL:AY800620EMBL:AY924730EMBL:CP002684EnsemblPlants:AT1G75520
EnsemblPlants:AT1G75520.1entrez:843888GeneID:843888Genevisible:Q9LQZ5GO:GO:0003677GO:GO:0005634GO:GO:0007275
GO:GO:0009734GO:GO:0009851GO:GO:0046872Gramene:AT1G75520.1hmmpanther:PTHR31604hmmpanther:PTHR31604:SF3HOGENOM:HOG000242956
InParanoid:Q9LQZ5InterPro:IPR006510InterPro:IPR006511InterPro:IPR007818KEGG:ath:AT1G75520OMA:HHHQDKSPaxDb:Q9LQZ5
Pfam:PF05142Pfam:Q9LQZ5PhylomeDB:Q9LQZ5PIR:F96785PRIDE:Q9LQZ5PRO:PR:Q9LQZ5Proteomes:UP000006548
RefSeq:NP_177684.1STRING:3702.AT1G75520.1TAIR:AT1G75520tair10-symbols:SRS5TIGRfam:TIGR01623TIGRfam:TIGR01624TIGRFAMs:TIGR01623
TIGRFAMs:TIGR01624UniGene:At.50038UniProt:Q9LQZ5
Coordinates (TAIR10) chr1:-:28351779..28353179
Molecular Weight (calculated) 38556.00 Da
IEP (calculated) 7.16
GRAVY (calculated) -0.97
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGFFYLGGR DNNSNNNKQD HHQVDKDHHH QDKSNYLYLY KDEIYNNNKG FEIWPPQYFQ QQEHQQQQQQ QQHASAPANF YSFGMVPSGS SSNNNNNRSR
101: SLYFNVVSDH EPGGFTVTRQ GGMNCQDCGN QAKKDCPHMR CRTCCKSRGF HCQTHVKSTW VPAAKRRERL AQLASLQHHS ASSRETQNAK RLREASGGDN
201: NDDKDHSGGG GSALANTRVV NANSNSGLEV SQHLPPEVNS PAIFRCVRVS SIEEDEDDQA YAYQTAVNIG GHIFKGILYD QGPEHQDNHH LNLLASTATT
301: TNVEETATKT VTGNNNNGLM LDPSSLYPAQ LNSFIAGTPF FTPPRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)