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AT1G75500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.863
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Walls Are Thin 1
Curator
Summary (TAIR10)
An Arabidopsis thaliana homolog of Medicago truncatula NODULIN21 (MtN21). The gene encodes a plant-specific, predicted integral membrane protein and is a member of the Plant-Drug/Metabolite Exporter (P-DME) family (Transporter Classification number: TC 2.A.7.3).
Computational
Description (TAIR10)
Walls Are Thin 1 (WAT1); INVOLVED IN: positive regulation of auxin metabolic process, positive regulation of tryptophan metabolic process, secondary cell wall biogenesis, unidimensional cell growth; LOCATED IN: plant-type vacuole membrane, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT3G53210.1); Has 4164 Blast hits to 4147 proteins in 615 species: Archae - 25; Bacteria - 1869; Metazoa - 6; Fungi - 0; Plants - 1248; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).
Protein Annotations
BioGrid:29105eggNOG:ENOG410IGHEeggNOG:ENOG410YAV4EMBL:AC006434EMBL:AC023754EMBL:AK226453EMBL:AK229900
EMBL:AY045896EMBL:AY091450EMBL:BT000668EMBL:CP002684EnsemblPlants:AT1G75500EnsemblPlants:AT1G75500.1EnsemblPlants:AT1G75500.2
entrez:843886GeneID:843886Genevisible:Q94AP3GO:GO:0000162GO:GO:0005774GO:GO:0005886GO:GO:0006810
GO:GO:0006952GO:GO:0009705GO:GO:0009734GO:GO:0009826GO:GO:0009834GO:GO:0009851GO:GO:0010315
GO:GO:0016021GO:GO:0022857GO:GO:0055085GO:GO:0071555GO:GO:0090355GO:GO:0090358Gramene:AT1G75500.1
Gramene:AT1G75500.2hmmpanther:PTHR31218hmmpanther:PTHR31218:SF53HOGENOM:HOG000237441InParanoid:Q94AP3IntAct:Q94AP3InterPro:IPR000620
InterPro:IPR030184iPTMnet:Q94AP3KEGG:ath:AT1G75500OMA:AFTILYAPANTHER:PTHR31218PaxDb:Q94AP3Pfam:PF00892
Pfam:Q94AP3PhylomeDB:Q94AP3PIR:E96785PRIDE:Q94AP3PRO:PR:Q94AP3ProteinModelPortal:Q94AP3Proteomes:UP000006548
RefSeq:NP_001185403.1RefSeq:NP_565111.1STRING:3702.AT1G75500.1SUPFAM:0043518TAIR:AT1G75500tair10-symbols:WAT1TMHMM:TMhelix
UniGene:At.21884UniGene:At.67310UniProt:Q94AP3
Coordinates (TAIR10) chr1:-:28338282..28340091
Molecular Weight (calculated) 42573.40 Da
IEP (calculated) 9.25
GRAVY (calculated) 0.57
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MADNTDNRRS LWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)