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AT1G75460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent protease La (LON) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G19740.1); Has 3715 Blast hits to 3715 proteins in 882 species: Archae - 0; Bacteria - 1742; Metazoa - 186; Fungi - 45; Plants - 112; Viruses - 0; Other Eukaryotes - 1630 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2802eggNOG:KOG4159EMBL:AC023754EMBL:AY045939EMBL:AY088757EMBL:AY142509EMBL:CP002684
EnsemblPlants:AT1G75460EnsemblPlants:AT1G75460.1entrez:843882GeneID:843882GO:GO:0004176GO:GO:0009507Gramene:AT1G75460.1
hmmpanther:PTHR23327hmmpanther:PTHR23327:SF12InterPro:IPR003111InterPro:IPR015947KEGG:ath:AT1G75460ncoils:CoilOMA:MLDHTRK
Pfam:PF02190PhylomeDB:Q9FWT4PIR:C96785Proteomes:UP000006548RefSeq:NP_177679.1SMART:SM00464SMR:Q9FWT4
STRING:3702.AT1G75460.1SUPFAM:SSF88697TAIR:AT1G75460UniGene:At.16258UniGene:At.67159UniProt:Q9FWT4
Coordinates (TAIR10) chr1:+:28327986..28328822
Molecular Weight (calculated) 31337.40 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.32
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MALPHVVSSP SSTSLSPSFK SKPPFHSLRS LSPTVDNRRR CKLNSSFRCS SSSFSEKHHN AKSPKSDDIV ELPLFPLPLV LFPGAILPLQ IFEFRYRIMM
101: HTLLQSDLRF GVVYSDSVSG SAAEVGCVGE VVKHERLVDD RFFLVCKGQE RFRVTNVVRT KPYLVGEVTW LEDRPSGEEN LDSLANEVEV LMKEVIRLSN
201: RLNGKAEKEV QDLRRNQFPT PFSFFVGSTF EGAPREQQAL LELEDTAARL KRERETLRNT LNYLTAASAV KDVFPSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)