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AT1G75450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytokinin oxidase 5
Curator
Summary (TAIR10)
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational
Description (TAIR10)
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6615 Blast hits to 6610 proteins in 1194 species: Archae - 154; Bacteria - 4290; Metazoa - 145; Fungi - 1218; Plants - 369; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G75450-MONOMERBioCyc:ARA:GQT-749-MONOMEREC:1.5.99.12eggNOG:COG0277eggNOG:KOG1231EMBL:AC023754EMBL:AF303982
EMBL:AK176378EMBL:CP002684EnsemblPlants:AT1G75450EnsemblPlants:AT1G75450.1entrez:843881ExpressionAtlas:Q67YU0Gene3D:3.30.43.10
Gene3D:3.30.465.10Gene3D:3.40.462.10GeneID:843881Genevisible:Q67YU0GO:GO:0005576GO:GO:0005615GO:GO:0009823
GO:GO:0016614GO:GO:0019139GO:GO:0050660gramene_pathway:1.5.99.12gramene_pathway:PWY-2841hmmpanther:PTHR13878hmmpanther:PTHR13878:SF60
HOGENOM:HOG000237593InParanoid:Q67YU0InterPro:IPR006093InterPro:IPR006094InterPro:IPR015345InterPro:IPR016164InterPro:IPR016166
InterPro:IPR016167InterPro:IPR016169InterPro:IPR016170OMA:MARCLVFPaxDb:Q67YU0Pfam:PF01565Pfam:PF09265
Pfam:Q67YU0Pfscan:PS51387PhylomeDB:Q67YU0PIR:B96785PRIDE:Q67YU0PRO:PR:Q67YU0PROSITE:PS00862
PROSITE:PS51387ProteinModelPortal:Q67YU0Proteomes:UP000006548RefSeq:NP_177678.2scanprosite:PS00862SMR:Q67YU0STRING:3702.AT1G75450.1
SUPFAM:SSF55103SUPFAM:SSF56176TAIR:AT1G75450tair10-symbols:ATCKX5tair10-symbols:ATCKX6tair10-symbols:CKX5TMHMM:TMhelix
UniGene:At.16253UniGene:At.28601UniProt:Q67YU0
Coordinates (TAIR10) chr1:-:28315248..28318064
Molecular Weight (calculated) 60427.00 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.19
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MNREMTSSFL LLTFAICKLI IAVGLNVGPS ELLRIGAIDV DGHFTVHPSD LASVSSDFGM LKSPEEPLAV LHPSSAEDVA RLVRTAYGSA TAFPVSARGH
101: GHSINGQAAA GRNGVVVEMN HGVTGTPKPL VRPDEMYVDV WGGELWVDVL KKTLEHGLAP KSWTDYLYLT VGGTLSNAGI SGQAFHHGPQ ISNVLELDVV
201: TGKGEVMRCS EEENTRLFHG VLGGLGQFGI ITRARISLEP APQRVRWIRV LYSSFKVFTE DQEYLISMHG QLKFDYVEGF VIVDEGLVNN WRSSFFSPRN
301: PVKISSVSSN GSVLYCLEIT KNYHDSDSEI VDQEVEILMK KLNFIPTSVF TTDLQYVDFL DRVHKAELKL RSKNLWEVPH PWLNLFVPKS RISDFDKGVF
401: KGILGNKTSG PILIYPMNKD KWDERSSAVT PDEEVFYLVA LLRSALTDGE ETQKLEYLKD QNRRILEFCE QAKINVKQYL PHHATQEEWV AHFGDKWDRF
501: RSLKAEFDPR HILATGQRIF QNPSLSLFPP SSSSSSAASW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)