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AT1G75400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19680.1); Has 285 Blast hits to 222 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 19; Plants - 178; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IV1IeggNOG:ENOG410YER7EMBL:AK117693EMBL:AY128403
EMBL:BT000078EMBL:CP002684EnsemblPlants:AT1G75400EnsemblPlants:AT1G75400.1
entrez:843876Gene3D:3.30.40.10GeneID:843876GO:GO:0008270
Gramene:AT1G75400.1hmmpanther:PTHR31150hmmpanther:PTHR31150:SF8HOGENOM:HOG000237740
IntAct:Q8L7K7InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G75400
ncoils:CoilOMA:PNDSHATPfscan:PS50089PhylomeDB:Q8L7K7
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_177673.1SMART:SM00184
SMR:Q8L7K7STRING:3702.AT1G75400.1SUPFAM:SSF57850TAIR:AT1G75400
UniGene:At.34780UniProt:Q8L7K7
Coordinates (TAIR10) chr1:+:28297609..28299464
Molecular Weight (calculated) 49303.80 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.57
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)