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AT1G75370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.959
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G19650.1); Has 2560 Blast hits to 2549 proteins in 232 species: Archae - 0; Bacteria - 2; Metazoa - 772; Fungi - 533; Plants - 872; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).
Protein Annotations
BioGrid:29092eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AC023754EMBL:AK118304EMBL:CP002684EnsemblPlants:AT1G75370
EnsemblPlants:AT1G75370.1entrez:843873ExpressionAtlas:Q8GXC6Gene3D:3.40.525.10GeneID:843873Genevisible:Q8GXC6GO:GO:0000139
GO:GO:0005215GO:GO:0005886GO:GO:0015031hmmpanther:PTHR23324hmmpanther:PTHR23324:SF75HOGENOM:HOG000196557InterPro:IPR001071
InterPro:IPR001251InterPro:IPR011074iPTMnet:Q8GXC6ncoils:CoilPaxDb:Q8GXC6Pfam:PF00650Pfam:PF03765
Pfam:Q8GXC6Pfscan:PS50191PhylomeDB:Q8GXC6PIR:B96784PRIDE:Q8GXC6PRINTS:PR00180PRO:PR:Q8GXC6
PROSITE:PS50191ProteinModelPortal:Q8GXC6Proteomes:UP000006548RefSeq:NP_177670.2SMART:SM00516SMART:SM01100SMR:Q8GXC6
STRING:3702.AT1G75370.2SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT1G75370TMHMM:TMhelixUniGene:At.34785UniProt:Q8GXC6
Coordinates (TAIR10) chr1:-:28276657..28279798
Molecular Weight (calculated) 69959.40 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.57
Length 612 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGSLDRFAR PCFEGVSSND ERRERRSDFE VSEDEKKTRI GNFNFKKKAA KASSKLRHSL KKKGSSRRRS SDRTFSLTIE DIHDVEELRA VDEFRNLLVS
101: ENLLPPTLDD YHIMLRFLKA RKFDIGKTKL MWSNMIKWRK DFGTDTIFED FEFEEFDEVL KYYPHGYHGV DKEGRPVYIE RLGLVDPAKL MQVTTVERFI
201: RYHVREFEKT VNIKLPACCI AAKRHIDSST TILDVQGVGF KNFSKPARDL IIQLQKIDND NYPETLHRMF IINGGSGFKL VWATVKQFLD PKTVTKIHVI
301: GNKYQNKLLE IIDASQLPDF LGGTCTCADR GGCMRSDKGP WNDPEILKML QSGGPLCRHN SALNSFSRVS SCDKPSFSGI KASDTSTAES GSEVEEMASP
401: KVNRELRVPK LTPVCEDIRG TAISYPTDSS EYDSPMVDKV VDVAWMAHEK PKASKGSEDT PDSGKIRTVT YIWRWLMMFF VNLFTLLISL ALPQREGHSQ
501: SESSVDGPNA RESRPPSPAF ATIAERNVFS SVVNRLGDLE KQVETLHSKR HEMPREKEEL LNTAVYRVDA LEAELIATKK ALHEALMRQD DLLAYIDREE
601: DEKYHKKKKV CW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)