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AT1G75240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 33
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox protein 33 (HB33); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 24 (TAIR:AT2G18350.1); Has 705 Blast hits to 675 proteins in 76 species: Archae - 0; Bacteria - 8; Metazoa - 117; Fungi - 10; Plants - 549; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY5VeggNOG:ENOG4111ACKEMBL:AC025814EMBL:AK229038EMBL:AY084462EMBL:BT028894EMBL:CP002684
EnsemblPlants:AT1G75240EnsemblPlants:AT1G75240.1entrez:843861Gene3D:1.10.10.60GeneID:843861Genevisible:Q9FRL5GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009737GO:GO:0009738GO:GO:0042803GO:GO:0045893
GO:GO:0046872Gramene:AT1G75240.1hmmpanther:PTHR31948hmmpanther:PTHR31948:SF15HOGENOM:HOG000238105InParanoid:Q9FRL5IntAct:Q9FRL5
InterPro:IPR006455InterPro:IPR006456InterPro:IPR009057iPTMnet:Q9FRL5KEGG:ath:AT1G75240OMA:LISHHRHPaxDb:Q9FRL5
Pfam:PF04770Pfam:Q9FRL5Pfscan:PS51523PhylomeDB:Q9FRL5PIR:G96782PRIDE:Q9FRL5PRO:PR:Q9FRL5
ProDom:PD125774PROSITE:PS51523ProteinModelPortal:Q9FRL5Proteomes:UP000006548RefSeq:NP_565106.1SMR:Q9FRL5STRING:3702.AT1G75240.1
SUPFAM:SSF46689TAIR:AT1G75240tair10-symbols:AtHB33tair10-symbols:HB33tair10-symbols:ZHD5TIGRfam:TIGR01565TIGRfam:TIGR01566
TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniGene:At.34802UniProt:Q9FRL5
Coordinates (TAIR10) chr1:+:28241576..28242505
Molecular Weight (calculated) 33894.80 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.89
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MDMRSHEMIE RRREDNGNNN GGVVISNIIS TNIDDNCNGN NNNTRVSCNS QTLDHHQSKS PSSFSISAAA KPTVRYRECL KNHAASVGGS VHDGCGEFMP
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)