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AT1G75220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G19450.1); Has 32350 Blast hits to 31611 proteins in 2276 species: Archae - 620; Bacteria - 16081; Metazoa - 5271; Fungi - 6395; Plants - 2558; Viruses - 2; Other Eukaryotes - 1423 (source: NCBI BLink).
Protein Annotations
BioGrid:29078eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC025814EMBL:AF412060EMBL:AY124845EMBL:CP002684
EnsemblPlants:AT1G75220EnsemblPlants:AT1G75220.1entrez:843859GeneID:843859Genevisible:Q9FRL3GO:GO:0005351GO:GO:0005355
GO:GO:0005774GO:GO:0005794GO:GO:0005887GO:GO:0009705GO:GO:0010030GO:GO:0015992GO:GO:0035428
GO:GO:0042593GO:GO:0046323GO:GO:1904659Gramene:AT1G75220.1hmmpanther:PTHR23500hmmpanther:PTHR23500:SF43HOGENOM:HOG000202868
InParanoid:Q9FRL3IntAct:Q9FRL3InterPro:IPR003663InterPro:IPR005828InterPro:IPR005829InterPro:IPR020846iPTMnet:Q9FRL3
KEGG:ath:AT1G75220OMA:ISIEVNEPaxDb:Q9FRL3Pfam:PF00083Pfam:Q9FRL3Pfscan:PS50850PhylomeDB:Q9FRL3
PIR:E96782PRIDE:Q9FRL3PRINTS:PR00171PRO:PR:Q9FRL3PROSITE:PS00216PROSITE:PS00217PROSITE:PS50850
ProteinModelPortal:Q9FRL3Proteomes:UP000006548Reactome:R-ATH-428790RefSeq:NP_177658.1scanprosite:PS00216scanprosite:PS00217SMR:Q9FRL3
STRING:3702.AT1G75220.1SUPFAM:SSF103473TAIR:AT1G75220TCDB:2.A.1.1.98TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelix
UniGene:At.22004UniProt:Q9FRL3
Coordinates (TAIR10) chr1:-:28229412..28232606
Molecular Weight (calculated) 52904.30 Da
IEP (calculated) 8.65
GRAVY (calculated) 0.62
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFRDDNEEA RNDLRRPFIH TGSWYRMGSR QSSMMGSSQV IRDSSISVLA CVLIVALGPI QFGFTCGYSS PTQAAITKDL GLTVSEYSVF GSLSNVGAMV
101: GAIASGQIAE YIGRKGSLMI AAIPNIIGWL CISFAKDTSF LYMGRLLEGF GVGIISYTVP VYIAEIAPQN MRGGLGSVNQ LSVTIGIMLA YLLGLFVPWR
201: ILAVLGILPC TLLIPGLFFI PESPRWLAKM GMTDEFETSL QVLRGFETDI TVEVNEIKRS VASSTKRNTV RFVDLKRRRY YFPLMVGIGL LVLQQLGGIN
301: GVLFYSSTIF ESAGVTSSNA ATFGVGAIQV VATAISTWLV DKAGRRLLLT ISSVGMTISL VIVAAAFYLK EFVSPDSDMY SWLSILSVVG VVAMVVFFSL
401: GMGPIPWLIM SEILPVNIKG LAGSIATLAN WFFSWLITMT ANLLLAWSSG GTFTLYGLVC AFTVVFVTLW VPETKGKTLE ELQSLFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)