AT1G75210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380), Purine 5'-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT5G48960.1); Has 679 Blast hits to 675 proteins in 116 species: Archae - 0; Bacteria - 48; Metazoa - 445; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28223990..28228751 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74317.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 642 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEWFISRNP TFSTAFPSSC ITVVNPNFIL LSSEFDSYTP QCLFNSLTTT MRLSKRQLSL PLSLCFSTFS PRSRFHHFPG KYPAPRREFL HTTGTSQLCF 101: KSSMEDQKPS ALSENVLQFH TVGSRDGCDV PHEWSSPEGG KKIDISNQIF CNRSLNMKNI IAVGFDMDYT LAQYKSETFE SLAYDGTVRK LVYDLGYPNE 201: LLEWTFDWNY MVRGLVLDKK RGNILKMDRH KYVKVAYHGF RELSKEDKVE IYGSSLVRDS FDEPDYALID TLFSLAEAYL FAQLVDFKDN NPEKVPKDVD 301: YARMYKDVRA AVDLCHRDGT LKQMVAKEPN RYINEDTTIV PLIKMIRDSG RSTFLVTNSL WDYTNIVMNF LCGGRTVHGP HTCNFDWLQY FDVVITGSAK 401: PGFFHEDSRA NLFEVEPQSG MLINTDNGTP MAQVGDPSPK ILLKSKDKGC RVFQGGNVGH LHSLLSIESS SQVLYVGDHI YGDILRSKKI LGWRTMLVVP 501: ELEKEVELLW ELRNMRKDLI LMRNERDSVE DKIHHLNWSL KFEDINENNK HEMLSALKDL ESKRDKVRQS HQQAQRECHQ KFHKVWGQLM KTGYQSSRFA 601: HQVERFACLY TSQVSNLRLY SPDKYYRPSE DFMSHEFHLL PL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)