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AT1G74880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)H:plastoquinone dehydrogenase complex subunit O
Curator
Summary (TAIR10)
Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
Computational
Description (TAIR10)
NAD(P)H:plastoquinone dehydrogenase complex subunit O (NDH-O); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase subunit O (InterPro:IPR020905); Has 87 Blast hits to 87 proteins in 27 species: Archae - 0; Bacteria - 33; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
EC:1.6.5.-eggNOG:ENOG410IY3DeggNOG:ENOG411201HEMBL:AC008263
EMBL:AC013258EMBL:AF344320EMBL:AF410289EMBL:AY143808
EMBL:CP002684EnsemblPlants:AT1G74880EnsemblPlants:AT1G74880.1entrez:843827
GeneID:843827Genevisible:Q9S829GO:GO:0005886GO:GO:0006810
GO:GO:0009507GO:GO:0009535GO:GO:0010258GO:GO:0010598
GO:GO:0016655GO:GO:0048038Gramene:AT1G74880.1hmmpanther:PTHR36728
hmmpanther:PTHR36728:SF2HOGENOM:HOG000238674InterPro:IPR020905KEGG:ath:AT1G74880
OMA:EYALVGWPaxDb:Q9S829Pfam:PF11910Pfam:Q9S829
PhylomeDB:Q9S829PIR:D96778PRIDE:Q9S829PRO:PR:Q9S829
ProteinModelPortal:Q9S829Proteomes:UP000006548RefSeq:NP_565093.1STRING:3702.AT1G74880.1
TAIR:AT1G74880tair10-symbols:NDH-OTCDB:3.D.1.8.1UniGene:At.11590
UniGene:At.71493UniProt:Q9S829
Coordinates (TAIR10) chr1:-:28130112..28131020
Molecular Weight (calculated) 17658.30 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.39
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSATVSQL SSLSTISSSL PISSRRLPHR SLPQFTVKAE AEKEKQSTQG KSDGEASPAA TKTPKTLPKK PVYSMKKGQI VRVEKEKYLN SINYLSVGHP
101: PFYKGLDYIY EDRGEVLDLR VFETGEYALV GWVGIPTAPA WLPTDMLIKC EKLVYERM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)