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AT1G74850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22616989 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid transcriptionally active 2
Curator
Summary (TAIR10)
Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
Computational
Description (TAIR10)
plastid transcriptionally active 2 (PTAC2); INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 58866 Blast hits to 15377 proteins in 307 species: Archae - 6; Bacteria - 74; Metazoa - 884; Fungi - 1027; Plants - 54432; Viruses - 0; Other Eukaryotes - 2443 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC008263EMBL:AC013258EMBL:CP002684EnsemblPlants:AT1G74850EnsemblPlants:AT1G74850.1
entrez:843824Gene3D:1.25.40.10GeneID:843824Genevisible:Q9S7Q2GO:GO:0009295GO:GO:0009507GO:GO:0009508
GO:GO:0042793GO:GO:0045893Gramene:AT1G74850.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF726HOGENOM:HOG000029475InParanoid:Q9S7Q2
IntAct:Q9S7Q2InterPro:IPR002625InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G74850MINT:MINT-8360669OMA:YDDDSNW
PaxDb:Q9S7Q2Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:Q9S7Q2Pfscan:PS50828Pfscan:PS51375
PhylomeDB:Q9S7Q2PIR:A96778PRIDE:Q9S7Q2PRO:PR:Q9S7Q2PROSITE:PS50828PROSITE:PS51375ProteinModelPortal:Q9S7Q2
Proteomes:UP000006548RefSeq:NP_177623.1SMART:SM00463SMR:Q9S7Q2STRING:3702.AT1G74850.1TAIR:AT1G74850tair10-symbols:PTAC2
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.34835UniProt:Q9S7Q2
Coordinates (TAIR10) chr1:-:28119237..28122314
Molecular Weight (calculated) 96331.00 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.26
Length 862 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)