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AT1G74840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G19000.2); Has 1391 Blast hits to 1386 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1204; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7GTeggNOG:ENOG410ZQZBEMBL:AC008263EMBL:AC013258EMBL:AY070098EMBL:AY096393EMBL:AY519510
EMBL:CP002684EnsemblPlants:AT1G74840EnsemblPlants:AT1G74840.1entrez:843823ExpressionAtlas:Q9S7N6Gene3D:1.10.10.60GeneID:843823
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009651GO:GO:0009723GO:GO:0009733
GO:GO:0009737GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0046686Gramene:AT1G74840.1hmmpanther:PTHR12374
hmmpanther:PTHR12374:SF26HOGENOM:HOG000237594IntAct:Q9S7N6InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
OMA:FDMTTDTPfam:PF00249Pfscan:PS51294PhylomeDB:Q9S7N6PIR:H96777PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_177622.1SMART:SM00717SMR:Q9S7N6STRING:3702.AT1G74840.1SUPFAM:SSF46689TAIR:AT1G74840TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.11594UniProt:Q9S7N6
Coordinates (TAIR10) chr1:-:28116201..28117317
Molecular Weight (calculated) 29267.40 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.55
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGSTSSSE STTACAGSGT RREIMLFGVR VVLDPMRKCV SLNNLSDYEQ TAETPKIDGE DRDEQDMNKT PAGYASADEA LPMSSSNGKI ERKRGVPWTE
101: EEHKLFLLGL QRVGKGDWKG ISRNFVKTRT STQVASHAQK YFLRRSNLNR RRRRSSLFDM TTDTVIPMEE DHQVLIQENT SQSSSPVPEI NNFSIHPVMQ
201: VFPEFPVPTG NQSYGQLTSS NLINLVPLTF QSSPAPLSLN LSLASSNLNE PSPSMHPAFN TIGVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)