AT1G74750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.910 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G18900.2); Has 54690 Blast hits to 14739 proteins in 296 species: Archae - 3; Bacteria - 64; Metazoa - 559; Fungi - 736; Plants - 51726; Viruses - 0; Other Eukaryotes - 1602 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28086800..28089367 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94714.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.50 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 855 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP 101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN 201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV 301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL 401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV 501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL 601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM 701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS 801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)