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AT1G74680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21908688 (2011): endoplasmic reticulum
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT3G45400.1); Has 1193 Blast hits to 1185 proteins in 64 species: Archae - 0; Bacteria - 4; Metazoa - 45; Fungi - 4; Plants - 1081; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
CAZy:GT47eggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:AY057616EMBL:BT002613EMBL:CP002684EMBL:KJ138934
EnsemblPlants:AT1G74680EnsemblPlants:AT1G74680.1entrez:843807GeneID:843807GO:GO:0016021GO:GO:0016740Gramene:AT1G74680.1
hmmpanther:PTHR11062hmmpanther:PTHR11062:SF99HOGENOM:HOG000238383InterPro:IPR004263KEGG:ath:AT1G74680OMA:VHRKNRYPfam:PF03016
PhylomeDB:Q93ZD5Proteomes:UP000006548RefSeq:NP_565089.1STRING:3702.AT1G74680.1TAIR:AT1G74680TMHMM:TMhelixUniGene:At.34850
UniGene:At.66806UniProt:Q93ZD5
Coordinates (TAIR10) chr1:+:28059528..28060984
Molecular Weight (calculated) 52661.80 Da
IEP (calculated) 9.15
GRAVY (calculated) -0.30
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKMSEKSLL SSKFLFYTIT VSTLLFIVSS LVFLQRHDSS FTSSLVRKLI LPRTDIKNEE FGLIDTKCDR DRDVLKVFMY DLPSEFHFGI LNWHKKGSEI
101: WPNVNNISTI PSYPGGLNRQ HSVEYWLTLD LLASETPEIK RPCSSAAIRV KNSNEADIVF VPFFASLSYN RKSKLRGNET SSDDRLLQER LVEFLKSQDE
201: WKRFDGKDHL IVAHHPNSLL YARNFLGSAM FVLSDFGRYS SAIANLEKDI IAPYVHVVKT ISNNESASFE KRPVLAYFQG AIYRKDGGTI RQELYNLLKD
301: EKDVHFAFGT VRGNGTKQTG KGMASSKFCL NIAGDTPSSN RLFDAIVSHC VPVIISDQIE LPFEDTLDYS GFSVFVHASE AVKKEFLVNI LRGITEDQWK
401: KKWGRLKEVA GCFEYRFPSQ VGDSVNMIWS AVSHKLSSLQ FDVHRKNRYR RSEMFDRNGS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)