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AT1G74670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Gibberellin-regulated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GAST1 protein homolog 4 (TAIR:AT5G15230.1); Has 479 Blast hits to 479 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 479; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J18AeggNOG:ENOG410YQ6UEMBL:AC011765EMBL:BT011599EMBL:CP002684EnsemblPlants:AT1G74670EnsemblPlants:AT1G74670.1
entrez:843806GeneID:843806Genevisible:Q6NMQ7GO:GO:0005576GO:GO:0009740GO:GO:0009744GO:GO:0009749
GO:GO:0009750GO:GO:0080167Gramene:AT1G74670.1hmmpanther:PTHR23201hmmpanther:PTHR23201:SF1HOGENOM:HOG000240234InParanoid:Q6NMQ7
InterPro:IPR003854KEGG:ath:AT1G74670OMA:CQKCCNKPaxDb:Q6NMQ7Pfam:PF02704Pfam:Q6NMQ7PhylomeDB:Q6NMQ7
PIR:H96775PRO:PR:Q6NMQ7ProteinModelPortal:Q6NMQ7Proteomes:UP000006548RefSeq:NP_177605.2STRING:3702.AT1G74670.1TAIR:AT1G74670
TMHMM:TMhelixUniGene:At.24065UniGene:At.67144UniProt:Q6NMQ7
Coordinates (TAIR10) chr1:+:28053378..28053893
Molecular Weight (calculated) 11342.00 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.25
Length 101 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)