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AT1G74660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : mini zinc finger 1
Curator
Summary (TAIR10)
Constitutive overexpression of MIF1 caused dramatic developmental defects, seedlings were non-responsive to gibberellin (GA) for cell elongation, hypersensitive to the GA synthesis inhibitor paclobutrazol (PAC) and abscisic acid (ABA), and hyposensitive to auxin, brassinosteroid and cytokinin, but normally responsive to ethylene.
Computational
Description (TAIR10)
mini zinc finger 1 (MIF1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456); BEST Arabidopsis thaliana protein match is: mini zinc finger (TAIR:AT1G18835.1); Has 423 Blast hits to 423 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3RUeggNOG:ENOG410YXCJEMBL:AC011765EMBL:AY085327EMBL:BT024806EMBL:CP002684EnsemblPlants:AT1G74660
EnsemblPlants:AT1G74660.1entrez:843805GeneID:843805Genevisible:Q9CA51GO:GO:0003677GO:GO:0005634GO:GO:0005737
GO:GO:0006351GO:GO:0007275GO:GO:0009640GO:GO:0009733GO:GO:0009735GO:GO:0009737GO:GO:0009739
GO:GO:0009741GO:GO:0042803GO:GO:0043392GO:GO:0045892GO:GO:0046872GO:GO:0048509Gramene:AT1G74660.1
hmmpanther:PTHR31948HOGENOM:HOG000243140InParanoid:Q9CA51IntAct:Q9CA51InterPro:IPR006456KEGG:ath:AT1G74660OMA:VIKQRSR
PaxDb:Q9CA51Pfam:PF04770Pfam:Q9CA51Pfscan:PS51523PhylomeDB:Q9CA51PIR:G96775PRIDE:Q9CA51
PRO:PR:Q9CA51ProDom:PD125774PROSITE:PS51523Proteomes:UP000006548RefSeq:NP_565088.1STRING:3702.AT1G74660.1TAIR:AT1G74660
tair10-symbols:MIF1TIGRfam:TIGR01566TIGRFAMs:TIGR01566UniGene:At.34853UniProt:Q9CA51
Coordinates (TAIR10) chr1:-:28047742..28048050
Molecular Weight (calculated) 11213.10 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.60
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKKRQMVIK QRSRNSNTSS SWTTTSSSSS SSEISNVRYV ECQKNHAANI GGYAVDGCRE FMAAGVEGTV DALRCAACGC HRNFHRKEVD TEVVCEYSPP
101: NA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)