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AT1G74580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.878
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 62554 Blast hits to 14470 proteins in 307 species: Archae - 5; Bacteria - 62; Metazoa - 860; Fungi - 1230; Plants - 58100; Viruses - 0; Other Eukaryotes - 2297 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011765EMBL:CP002684
EnsemblPlants:AT1G74580EnsemblPlants:AT1G74580.1entrez:843798Gene3D:1.25.40.10
GeneID:843798Genevisible:Q9CA58Gramene:AT1G74580.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF14HOGENOM:HOG000006341InParanoid:Q9CA58InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT1G74580OMA:VFERMDFPaxDb:Q9CA58
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9CA58
Pfscan:PS51375PhylomeDB:Q9CA58PIR:H96774PRIDE:Q9CA58
PRO:PR:Q9CA58PROSITE:PS51375ProteinModelPortal:Q9CA58Proteomes:UP000006548
RefSeq:NP_177597.1SMR:Q9CA58STRING:3702.AT1G74580.1SUPFAM:SSF81901
TAIR:AT1G74580TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.52514
UniProt:Q9CA58
Coordinates (TAIR10) chr1:+:28020777..28023068
Molecular Weight (calculated) 85775.00 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.05
Length 763 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPPLLPKHV TAVIKCQKDP MKALEMFNSM RKEVGFKHTL STYRSVIEKL GYYGKFEAME EVLVDMRENV GNHMLEGVYV GAMKNYGRKG KVQEAVNVFE
101: RMDFYDCEPT VFSYNAIMSV LVDSGYFDQA HKVYMRMRDR GITPDVYSFT IRMKSFCKTS RPHAALRLLN NMSSQGCEMN VVAYCTVVGG FYEENFKAEG
201: YELFGKMLAS GVSLCLSTFN KLLRVLCKKG DVKECEKLLD KVIKRGVLPN LFTYNLFIQG LCQRGELDGA VRMVGCLIEQ GPKPDVITYN NLIYGLCKNS
301: KFQEAEVYLG KMVNEGLEPD SYTYNTLIAG YCKGGMVQLA ERIVGDAVFN GFVPDQFTYR SLIDGLCHEG ETNRALALFN EALGKGIKPN VILYNTLIKG
401: LSNQGMILEA AQLANEMSEK GLIPEVQTFN ILVNGLCKMG CVSDADGLVK VMISKGYFPD IFTFNILIHG YSTQLKMENA LEILDVMLDN GVDPDVYTYN
501: SLLNGLCKTS KFEDVMETYK TMVEKGCAPN LFTFNILLES LCRYRKLDEA LGLLEEMKNK SVNPDAVTFG TLIDGFCKNG DLDGAYTLFR KMEEAYKVSS
601: STPTYNIIIH AFTEKLNVTM AEKLFQEMVD RCLGPDGYTY RLMVDGFCKT GNVNLGYKFL LEMMENGFIP SLTTLGRVIN CLCVEDRVYE AAGIIHRMVQ
701: KGLVPEAVNT ICDVDKKEVA APKLVLEDLL KKSCITYYAY ELLFDGLRDK RLRKKKGFTV VAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)