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AT1G74520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.718
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HVA22 homologue A
Curator
Summary (TAIR10)
Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible.
Computational
Description (TAIR10)
HVA22 homologue A (HVA22A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue C (TAIR:AT1G69700.1); Has 1523 Blast hits to 1523 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 215; Plants - 516; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
BioGrid:29012DNASU:843793eggNOG:COG5052eggNOG:KOG1725EMBL:AC011765EMBL:AF141659EMBL:AF141977
EMBL:AK118825EMBL:BT005492EMBL:CP002684EnsemblPlants:AT1G74520EnsemblPlants:AT1G74520.1entrez:843793GeneID:843793
Genevisible:Q9S7V4GO:GO:0009409GO:GO:0009414GO:GO:0009737GO:GO:0016021GO:GO:0042538Gramene:AT1G74520.1
hmmpanther:PTHR12300hmmpanther:PTHR12300:SF52HOGENOM:HOG000241758InParanoid:Q9S7V4IntAct:Q9S7V4InterPro:IPR004345KEGG:ath:AT1G74520
OMA:VLYSMITPANTHER:PTHR12300PaxDb:Q9S7V4Pfam:PF03134Pfam:Q9S7V4PhylomeDB:Q9S7V4PIR:C96774
PRIDE:Q9S7V4PRO:PR:Q9S7V4Proteomes:UP000006548RefSeq:NP_177592.1STRING:3702.AT1G74520.1TAIR:AT1G74520tair10-symbols:ATHVA22A
tair10-symbols:HVA22ATMHMM:TMhelixUniGene:At.24678UniProt:Q9S7V4
Coordinates (TAIR10) chr1:-:28008109..28009156
Molecular Weight (calculated) 20680.00 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.03
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSGAGNFLK VLLRNFDVLA GPVVSLVYPL YASVQAIETQ SHADDKQWLT YWVLYSLLTL IELTFAKLIE WLPIWSYMKL ILTCWLVIPY FSGAAYVYEH
101: FVRPVFVNPR SINIWYVPKK MDIFRKPDDV LTAAEKYIAE NGPDAFEKIL SRADKSKRYN KHEYESYETM YGEGYQY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)