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AT1G74500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Curator
Summary (TAIR10)
Encodes a basic helix–loop–helix transcription factor that acts downstream of MP in root initiation. TMO7 protein moves to the hypophysis and to vascular cells, contributing to MP-dependent root formation. Promotes the correct definition of the hypophysis cell division plane.
Computational
Description (TAIR10)
activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (BS1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BANQUO 3 (TAIR:AT3G47710.1); Has 97 Blast hits to 97 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:29010eggNOG:ENOG410J0M0eggNOG:ENOG411140IEMBL:AC011765EMBL:AK227395EMBL:AY088286EMBL:BT003046
EMBL:CP002684EnsemblPlants:AT1G74500EnsemblPlants:AT1G74500.1entrez:843791Gene3D:4.10.280.10GeneID:843791Genevisible:Q9CA64
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0009740GO:GO:0009742GO:GO:0010086
GO:GO:0040008Gramene:AT1G74500.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF140HOGENOM:HOG000239487InParanoid:Q9CA64IntAct:Q9CA64
InterPro:IPR011598KEGG:ath:AT1G74500ncoils:CoilOMA:PEIGNRLPaxDb:Q9CA64Pfam:PF00010Pfam:Q9CA64
Pfscan:PS50888PhylomeDB:Q9CA64PIR:A96774PRIDE:Q9CA64PRO:PR:Q9CA64PROSITE:PS50888ProteinModelPortal:Q9CA64
Proteomes:UP000006548RefSeq:NP_177590.1STRING:3702.AT1G74500.1SUPFAM:SSF47459TAIR:AT1G74500tair10-symbols:ATBS1tair10-symbols:BS1
tair10-symbols:TMO7UniGene:At.43100UniProt:Q9CA64
Coordinates (TAIR10) chr1:-:27998298..27998668
Molecular Weight (calculated) 10581.50 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.68
Length 93 amino acids
Sequence (TAIR10)
(BLAST)
1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)