suba logo
AT1G74470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19676087 (2009): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pyridine nucleotide-disulphide oxidoreductase family protein
Curator
Summary (TAIR10)		 Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate.
Computational
Description (TAIR10)		 Pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: geranylgeranyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Geranylgeranyl reductase (InterPro:IPR010253), Geranylgeranyl reductase, plant/cyanobacteria (InterPro:IPR011774), Geranylgeranyl reductase, plant/prokaryotic (InterPro:IPR011777); Has 4540 Blast hits to 4539 proteins in 1185 species: Archae - 562; Bacteria - 2644; Metazoa - 5; Fungi - 25; Plants - 302; Viruses - 0; Other Eukaryotes - 1002 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G74470-MONOMERBioCyc:MetaCyc:AT1G74470-MONOMERBioGrid:29007BRENDA:1.3.1.83
DIP:DIP-53238NEC:1.3.1.83eggNOG:COG0644eggNOG:ENOG410IFMU
EMBL:AC011765EMBL:AK221185EMBL:AK317575EMBL:AY050893
EMBL:AY052328EMBL:AY059860EMBL:AY075688EMBL:AY091297
EMBL:AY102144EMBL:BT000656EMBL:BT000734EMBL:BT002571
EMBL:CP002684EMBL:Y14044EnsemblPlants:AT1G74470EnsemblPlants:AT1G74470.1
entrez:843788Gene3D:3.40.50.720GeneID:843788Genevisible:Q9CA67
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009941
GO:GO:0010189GO:GO:0015979GO:GO:0015995GO:GO:0016020
GO:GO:0016628GO:GO:0031969GO:GO:0045550Gramene:AT1G74470.1
gramene_pathway:1.3.1.-gramene_pathway:PWY-5063gramene_pathway:PWY-5064gramene_plant_reactome:1119602
gramene_plant_reactome:1119605gramene_plant_reactome:6873872gramene_plant_reactome:6874697gramene_plant_reactome:6874959
gramene_plant_reactome:6875441gramene_plant_reactome:6875747gramene_plant_reactome:6876596hmmpanther:PTHR10617
hmmpanther:PTHR10617:SF116HOGENOM:HOG000147662InParanoid:Q9CA67IntAct:Q9CA67
InterPro:IPR010253InterPro:IPR011774InterPro:IPR011777InterPro:IPR016040
InterPro:IPR023753KEGG:00900+1.3.1.83KEGG:ath:AT1G74470KO:K10960
MINT:MINT-8300918OMA:EDKMAYYPaxDb:Q9CA67Pfam:PF07992
Pfam:Q9CA67PhylomeDB:Q9CA67PIR:F96773PRIDE:Q9CA67
PRO:PR:Q9CA67ProteinModelPortal:Q9CA67Proteomes:UP000006548RefSeq:NP_177587.1
SMR:Q9CA67STRING:3702.AT1G74470.1SUPFAM:SSF51905TAIR:AT1G74470
TIGRfam:TIGR02023TIGRfam:TIGR02028TIGRfam:TIGR02032TIGRFAMs:TIGR02023
TIGRFAMs:TIGR02028TIGRFAMs:TIGR02032UniGene:At.25263UniPathway:UPA00160
UniPathway:UPA00668UniProt:Q9CA67
Coordinates (TAIR10) chr1:+:27991248..27992845
Molecular Weight (calculated) 51840.50 Da
IEP (calculated) 9.23
GRAVY (calculated) -0.36
Length 467 amino acids
Sequence (TAIR10)
(BLAST) 		001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)