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AT1G74410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.386
nucleus 0.223
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G66070.1); Has 8249 Blast hits to 8227 proteins in 266 species: Archae - 0; Bacteria - 2; Metazoa - 2095; Fungi - 538; Plants - 4672; Viruses - 24; Other Eukaryotes - 918 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC011765EMBL:AY050433EMBL:AY087335EMBL:AY093797EMBL:CP002684
EMBL:DQ059105EnsemblPlants:AT1G74410EnsemblPlants:AT1G74410.1entrez:843782Gene3D:3.30.40.10GeneID:843782Genevisible:Q8LBA0
GO:GO:0006952GO:GO:0008270GO:GO:0010200GO:GO:0016021Gramene:AT1G74410.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF138
HOGENOM:HOG000242081InParanoid:Q8LBA0InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G74410OMA:ESICEYCPaxDb:Q8LBA0
Pfam:PF13639Pfam:Q8LBA0Pfscan:PS50089PhylomeDB:Q8LBA0PIR:H96772PRIDE:Q8LBA0PRO:PR:Q8LBA0
PROSITE:PS50089ProteinModelPortal:Q8LBA0Proteomes:UP000006548RefSeq:NP_565085.1SMART:SM00184SMR:Q8LBA0STRING:3702.AT1G74410.1
SUPFAM:SSF57850TAIR:AT1G74410TMHMM:TMhelixUniGene:At.20400UniGene:At.28630UniProt:Q8LBA0
Coordinates (TAIR10) chr1:+:27965723..27967681
Molecular Weight (calculated) 24263.20 Da
IEP (calculated) 5.94
GRAVY (calculated) 0.08
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTTLSPAVE AEQIADSTID TVSRLIAGVF SGALTGIFAM AGAFTGAVTG AVAGRAAQYG VLRGAALGAV AGAILSVEVL EASRAYWYLE LSGSRGPSSM
101: ADFVEQLFRG RLVDEQLMST MINSHHWQLR ISDVSYEERE DVYGELEARG LSGDSLRKLP CYIMSSEMVR RQVTHCTICL QDIKTGEITR SLPKCDHTFH
201: LVCVDKWLIR HGSCPICRQA VKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)