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AT1G74390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.969
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G61390.1); Has 799 Blast hits to 786 proteins in 313 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
EC:3.1.11.-eggNOG:ENOG410IGQ7eggNOG:ENOG4111I48EMBL:AC011765EMBL:AY099717EMBL:BT000288EMBL:CP002684
EnsemblPlants:AT1G74390EnsemblPlants:AT1G74390.1EnsemblPlants:AT1G74390.2entrez:843780ExpressionAtlas:Q9CA74Gene3D:3.30.420.10GeneID:843780
Genevisible:Q9CA74GO:GO:0003676GO:GO:0004527GO:GO:0046872hmmpanther:PTHR30231hmmpanther:PTHR30231:SF6HOGENOM:HOG000243435
InParanoid:Q9CA74InterPro:IPR012337InterPro:IPR013520KEGG:ath:AT1G74390OMA:GDQAHRSPaxDb:Q9CA74Pfam:PF00929
Pfam:Q9CA74PhylomeDB:Q9CA74PIR:F96772PRIDE:Q9CA74PRO:PR:Q9CA74ProteinModelPortal:Q9CA74Proteomes:UP000006548
RefSeq:NP_001185397.1RefSeq:NP_177579.1SMART:SM00479SMR:Q9CA74STRING:3702.AT1G74390.1SUPFAM:SSF53098TAIR:AT1G74390
UniGene:At.34885UniProt:Q9CA74
Coordinates (TAIR10) chr1:-:27961760..27963826
Molecular Weight (calculated) 55636.10 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.23
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSLGGDER SEIAFFDLET AVPTKSGEPF AILEFGAILV CPRRLEELYS YSTLVRPTDL SLISTLTKRR SGITRDGVLS AHTFSEIADK VYDILHGRIW
101: AGHNIIRFDC VRIREAFAEI GLSPPEPKAT IDSLSLLSQK FGKRAGDMKM ASLATYFGLG DQAHRSLDDV RMNLEVVKYC ATVLFLESSV PDILTDMSWF
201: SPRKSPRTRS NGKLVANGVR ESSTSSSSSP KTDPSSSSVD ATIVKNHPIV SLLTECSESD ASSYDIEDPI DITTLIGKLR IGTLQTDAAE EAKTVRQQDE
301: SPPSPDSDAK DESFLGVNEV SVSSIRASLV PFYRGSLRMK LFHNDTPLHL CWHSLKVRFG ISRKFVDHAG RPKLNIIVDA PLDLCKILDA VDAAAHNLPT
401: DSSTNSDWRP TVIRKEGFAN YPTARLHISS ESNGDDTLCG TQVYQKEEPL GTNQKLDVSS DNLEKLESAL LPGTLVDAFF SLEPYSYQQM AGIRLAVKKL
501: VILLKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)