AT1G74390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G61390.1); Has 799 Blast hits to 786 proteins in 313 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27961760..27963826 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55636.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSLGGDER SEIAFFDLET AVPTKSGEPF AILEFGAILV CPRRLEELYS YSTLVRPTDL SLISTLTKRR SGITRDGVLS AHTFSEIADK VYDILHGRIW 101: AGHNIIRFDC VRIREAFAEI GLSPPEPKAT IDSLSLLSQK FGKRAGDMKM ASLATYFGLG DQAHRSLDDV RMNLEVVKYC ATVLFLESSV PDILTDMSWF 201: SPRKSPRTRS NGKLVANGVR ESSTSSSSSP KTDPSSSSVD ATIVKNHPIV SLLTECSESD ASSYDIEDPI DITTLIGKLR IGTLQTDAAE EAKTVRQQDE 301: SPPSPDSDAK DESFLGVNEV SVSSIRASLV PFYRGSLRMK LFHNDTPLHL CWHSLKVRFG ISRKFVDHAG RPKLNIIVDA PLDLCKILDA VDAAAHNLPT 401: DSSTNSDWRP TVIRKEGFAN YPTARLHISS ESNGDDTLCG TQVYQKEEPL GTNQKLDVSS DNLEKLESAL LPGTLVDAFF SLEPYSYQQM AGIRLAVKKL 501: VILLKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)