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AT1G74370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2); Has 323 Blast hits to 323 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 2; Plants - 134; Viruses - 3; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHQ9eggNOG:ENOG4111M5CEMBL:AC011765EMBL:AK228525
EMBL:BT024485EMBL:CP002684EMBL:DQ059104EnsemblPlants:AT1G74370
EnsemblPlants:AT1G74370.1entrez:843778Gene3D:3.30.40.10GeneID:843778
GO:GO:0008270GO:GO:0016021Gramene:AT1G74370.1hmmpanther:PTHR13139
hmmpanther:PTHR13139:SF47InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907
InterPro:IPR027370KEGG:ath:AT1G74370OMA:GHTICKYPfam:PF13445
Pfscan:PS50089PhylomeDB:Q9CA76PIR:D96772PROSITE:PS00518
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_177577.1scanprosite:PS00518
SMR:Q9CA76STRING:3702.AT1G74370.1SUPFAM:SSF57850TAIR:AT1G74370
TMHMM:TMhelixUniGene:At.18127UniGene:At.48371UniProt:Q9CA76
Coordinates (TAIR10) chr1:-:27958200..27958985
Molecular Weight (calculated) 29402.00 Da
IEP (calculated) 9.52
GRAVY (calculated) 0.18
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MWNLASKSIR EGFISKGEEA ATKPRRATLD RSGDGRKTTK EEKLECPICW ESFNVVENVP YVLWCGHTIC KYCLLGLQRA IVIKSSALPF QLPFFVACPW
101: CNILSLRLVC NGTIRFPSKN FYLLWMVESM NGSRSEAPSD NKRVASGQRD LRNRCDGVSN TALGDEGLLD NRSWWNGVTR GFFRTGRLHD SVRKSMALVA
201: HLLAKFPLVV IFLLMALYAI PVSAAVLGVY FFVTFALAVP SFLVLYFAFP SLNWLIREIA T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)