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AT1G74210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT5G08030.1); Has 7091 Blast hits to 6951 proteins in 1731 species: Archae - 61; Bacteria - 5445; Metazoa - 267; Fungi - 122; Plants - 347; Viruses - 7; Other Eukaryotes - 842 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G74210-MONOMEREC:3.1.4.46eggNOG:COG0584eggNOG:KOG2258
EMBL:AC020579EMBL:AY064037EMBL:AY086343EMBL:AY142654
EMBL:CP002684EnsemblPlants:AT1G74210EnsemblPlants:AT1G74210.1entrez:843761
Gene3D:3.20.20.190GeneID:843761Genevisible:Q9C907GO:GO:0005576
GO:GO:0005618GO:GO:0005773GO:GO:0006071GO:GO:0006629
GO:GO:0008889Gramene:AT1G74210.1hmmpanther:PTHR23344hmmpanther:PTHR23344:SF7
HOGENOM:HOG000004694InParanoid:Q9C907InterPro:IPR004129InterPro:IPR017946
InterPro:IPR030395KEGG:ath:AT1G74210KO:K01126OMA:CILDETT
PANTHER:PTHR23344PaxDb:Q9C907Pfam:PF03009Pfam:Q9C907
Pfscan:PS51704PhylomeDB:Q9C907PIR:D96770PRIDE:Q9C907
PRO:PR:Q9C907PROSITE:PS51704ProteinModelPortal:Q9C907Proteomes:UP000006548
RefSeq:NP_177561.1SMR:Q9C907STRING:3702.AT1G74210.1SUPFAM:SSF51695
TAIR:AT1G74210UniGene:At.67610UniGene:At.75098UniProt:Q9C907
Coordinates (TAIR10) chr1:+:27910396..27912785
Molecular Weight (calculated) 45023.80 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.33
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MILTRCLPLI WLSLLTVCAA GRTLHPLPVK GPKTVKLQLQ TSRPYNIAHR GSNGEIPEET TAAYLKAIEE GTDFIETDIL SSKDGVLICF HDCILDETTN
101: VASHKEFADR KRTYDVQGFN ITGFFTFDFT LKELKQLRIK QRYAFRDQQY NGMYPIITFE EFLTIARDAP RVVGIYPEIK NPVLMNQHVK WPGGKKFEDK
201: VVETLKKYGY GGSYLSKKWL KKPLFIQSFA PTSLVYISNL TDSPKVLLID DVTMPTQDTN QTYAEITSDA YFEYIKQYVV GIGPWKDTIV PVNNNYVLAP
301: TDLVKRAHAH NLQVHPYTYR NEHEFLHYNF SQDPYKEYDY WINEIGVDGL FTDFTGSLHN FQEWTSPLPD TSKSPRQLLS QIASLVLPYA KA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)