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AT1G74170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.850
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 13 (RLP13); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 15 (TAIR:AT1G74190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002684EnsemblPlants:AT1G74170
EnsemblPlants:AT1G74170.1entrez:843757Gene3D:3.80.10.10GeneID:843757
GO:GO:0016021Gramene:AT1G74170.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF29
InParanoid:F4HTV3InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675
KEGG:ath:AT1G74170OMA:PISGTYYPaxDb:F4HTV3Pfam:PF00560
Pfam:PF13855PRIDE:F4HTV3ProteinModelPortal:F4HTV3Proteomes:UP000006548
RefSeq:NP_177557.2SMART:SM00369SMR:F4HTV3STRING:3702.AT1G74170.1
SUPFAM:SSF52047TAIR:AT1G74170tair10-symbols:AtRLP13tair10-symbols:RLP13
TMHMM:TMhelixUniGene:At.22865UniProt:F4HTV3
Coordinates (TAIR10) chr1:-:27891555..27895441
Molecular Weight (calculated) 112058.00 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.05
Length 1000 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVECNRKSG RITNIAFGIG FIIENPLLNL SLLHPFEDVR SLDLSSSRSC EDCGFSGLFD DVEGYKSLSR LRNLEILDLS SHRFNNSIFP FLNAATSLTT
101: LFLTYNNMHS PFLVKEFKDL TNLEHLDLRG NRFNGSIPTQ DYNSLRRFRK LEILDLSDNL FNSRIFPFLN SATSLKSLSL WGNNMGGPFP AKELRDLTNV
201: ELLDLSRNRF NGSIPVRALF ALRKLKALDL SDNEFSSSVE LQGKFAKTKP LSGTCPWKNM EELKLSNNKL AGQFPLCLTS LTGLRVLDLS SNQLTGNVPS
301: ALANLESLEY LSLFGNNFEG FFSLGLLANL SKLKVLRLDS QSNSLEVEFE TSWKPKFQLV VIALRSCNLE KVPHFLLHQK DLHHVDLSDN QIHGNFPSWL
401: LENNTKLEVL LLQNNSFTSF QLPKSAHNLL FLNVSVNKFN HLFLQNFGWI LPHLVCVNLA YNGFQGNLPS SLDNMKSIEF LDLSHNRFHG KLPRRFLKGC
501: YNLTILKLSH NKLSGEVFPE AANFTRLWVM SMDNNLFTGN IGKGFRSLPS LNVLDISNNK LTGVIPSWIG ERQGLFALQL SNNMLEGEIP TSLFNISYLQ
601: LLDLSSNRLS GDIPPHVSSI YHGAVLLLQN NNLSGVIPDT LLLNVIVLDL RNNRLSGNLP EFINTQNISI LLLRGNNFTG QIPHQFCSLS NIQLLDLSNN
701: KFNGSIPSCL SNTSFGLRKG DDSYRYDVPS RFGTAKDPVY FESLLMIDEF NMVNETNSQT KIEFATKHRY DAYMGGNLKL LFGMDLSENE LSGEIPVELG
801: GLVELEALNL SHNNLSGVIL ESFSGLKNVE SLDLSFNRLQ GPIPLQLTDM ISLAVFNVSY NNLSGIVPQG RQFNTFETQS YFGNPLLCGK SIDISCASNN
901: FHPTDNGVEA DESTVDMESF YWSFVAAYVT ILLGILASLS FDSPWSRAWF YIVDAFVLKV RNMLWQNTAG TKCSYVLVSL SSPSVVVLLK PPALFHKTRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)