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AT1G74070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin 20-2 (TAIR:AT5G13120.1); Has 3262 Blast hits to 3261 proteins in 458 species: Archae - 0; Bacteria - 134; Metazoa - 1442; Fungi - 557; Plants - 702; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G74070-MONOMEREC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865
EMBL:AC016662EMBL:AY062660EMBL:AY093323EMBL:CP002684
EnsemblPlants:AT1G74070EnsemblPlants:AT1G74070.1entrez:843747Gene3D:2.40.100.10
GeneID:843747Genevisible:F4HTT6GO:GO:0003755GO:GO:0006457
GO:GO:0009507GO:GO:0009534GO:GO:0042277Gramene:AT1G74070.1
hmmpanther:PTHR11071hmmpanther:PTHR11071:SF244HOGENOM:HOG000237430InParanoid:F4HTT6
InterPro:IPR002130InterPro:IPR024936InterPro:IPR029000iPTMnet:F4HTT6
KEGG:ath:AT1G74070KO:K03768OMA:YRRKEFIPANTHER:PTHR11071
PaxDb:F4HTT6Pfam:F4HTT6Pfam:PF00160Pfscan:PS50072
PIR:F96768PRIDE:F4HTT6PRO:PR:F4HTT6PROSITE:PS50072
ProteinModelPortal:F4HTT6Proteomes:UP000006548RefSeq:NP_565079.1SMR:F4HTT6
STRING:3702.AT1G74070.1SUPFAM:SSF50891TAIR:AT1G74070UniGene:At.27271
UniProt:F4HTT6
Coordinates (TAIR10) chr1:-:27851749..27852861
Molecular Weight (calculated) 34376.70 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.21
Length 317 amino acids
Sequence (TAIR10)
(BLAST) 		001: MMQPNAKLLS PSAKFLPSPI EPPQHNRRTT VGAPPSLERN CKLSRRNLSK SSLLLLLTTQ TTLTPLLDFS KAQADTIANP NLTNCENRIP TKKAFIDVSI
101: DGEPIGRIII GLYGDDVPAG TARFSSIVSG KAGITYRRKD FVKIMPGYVQ HGGIRSYGVD AERATAAVGS LQNLIEEWER GKRGEICNVN KAGSVGIVVR
201: DPSKPPPKTK LVARNGKLVV EEEVIAVGPN GTEFVITAVD SPELEDSVLV IGKVLEGMGV VEKMREVKTV RDNTSSPYFR VAKVIGDKRA VVAERGFNRP
301: YSKVVVTNCG LIESQTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)