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AT1G73990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : signal peptide peptidase
Curator
Summary (TAIR10)
Encodes a putative protease SppA (SppA).
Computational
Description (TAIR10)
signal peptide peptidase (SPPA); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S49, protease IV (InterPro:IPR004634), Peptidase S49 (InterPro:IPR002142), Peptidase S49, SppA (InterPro:IPR004635); Has 9340 Blast hits to 7649 proteins in 1706 species: Archae - 204; Bacteria - 6183; Metazoa - 9; Fungi - 4; Plants - 52; Viruses - 43; Other Eukaryotes - 2845 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1982-MONOMEREC:3.4.21.-eggNOG:COG0616eggNOG:ENOG410IFF4EMBL:AC016662EMBL:AF114385EMBL:BT000429
EMBL:BT003350EMBL:CP002684EnsemblPlants:AT1G73990EnsemblPlants:AT1G73990.1entrez:843737Gene3D:3.90.226.10GeneID:843737
Genevisible:Q9C9C0GO:GO:0004252GO:GO:0006465GO:GO:0006508GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0009570GO:GO:0009941GO:GO:0016021Gramene:AT1G73990.1hmmpanther:PTHR33209hmmpanther:PTHR33209:SF1HOGENOM:HOG000239446
InParanoid:Q9C9C0InterPro:IPR002142InterPro:IPR004634InterPro:IPR004635InterPro:IPR029045iPTMnet:Q9C9C0KEGG:ath:AT1G73990
KO:K04773MEROPS:S49.004OMA:ASEQIWHPaxDb:Q9C9C0Pfam:PF01343Pfam:Q9C9C0PhylomeDB:Q9C9C0
PIR:F96767PIRSF:PIRSF001217PRIDE:Q9C9C0PRO:PR:Q9C9C0ProteinModelPortal:Q9C9C0Proteomes:UP000006548RefSeq:NP_565077.2
SMR:Q9C9C0STRING:3702.AT1G73990.1SUPFAM:SSF52096TAIR:AT1G73990tair10-symbols:SPPAtair10-symbols:SPPA1TIGRfam:TIGR00706
TIGRFAMs:TIGR00706UniGene:At.20800UniProt:Q9C9C0
Coordinates (TAIR10) chr1:+:27824465..27828807
Molecular Weight (calculated) 75098.80 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.23
Length 677 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKLLLLHAP HVIPRFSSSS SRSLVSAAAL YRRPLLVNPQ FSHIGPRLHS PYNRRFSARA FDDSPASSAE MEKEKQEQLL DGVSGKKDED YPTGEMEYEN
101: RNAWEIFVVK FRMLFAYPWQ RVRKGSVLTM TLRGQISDQL KSRFNSGLSL PQLSENFVKA AYDPRIAGVY LHIDPLSCGW GKVEEIRRHI LNFKKSGKFI
201: VGYISICGLK EYYLGCACNE LFAPPSAYSF LYGLTVQASF LGGVFEKVGI EPQVQRIGKY KSAGDQLSRK SISEENYEML SVLLDNIYSN WLDGVSDATG
301: KKREDVENFI NQGVYEIEKL KEAGLIKDIR YDDEVITMLK ERLGVEKDKK LPTVDYKKYS GVKKWTLGLT GGRDQIAIIR AGGSISRVKG PLSTPGSAII
401: AEQLIEKIRS VRESKKYKAA IIRIDSPGGD ALASDLMWRE IKLLAETKPV IASMSDVAAS GGYYMAMAAN AIVAENLTLT GSIGVVTARF TLAKLYEKIG
501: FNKETISRGK YAELLGAEER PLKPEEAELF EKSAQHAYQL FRDKAALSRS MPVDKMEEVA QGRVWTGKDA HSRGLIDAVG GLSRAIAIAK QKANIPLNKK
601: VTLVELSRPS TSLPDILSGI GSSVIGVDRT LKGLLDELTI TEGVQARMDG IMFQQLGRDS LATPIIDMLK DYLSSLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)