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AT1G73960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-associated factor 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TBP-associated factor 2 (TAF2); FUNCTIONS IN: metallopeptidase activity, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); Has 6967 Blast hits to 5425 proteins in 796 species: Archae - 100; Bacteria - 1288; Metazoa - 2650; Fungi - 808; Plants - 323; Viruses - 9; Other Eukaryotes - 1789 (source: NCBI BLink).
Protein Annotations
BioGrid:28952eggNOG:ENOG410XS52eggNOG:KOG1932EMBL:AC016662EMBL:AY102124EMBL:AY457045EMBL:CP002684
EnsemblPlants:AT1G73960EnsemblPlants:AT1G73960.1EnsemblPlants:AT1G73960.2entrez:843733ExpressionAtlas:Q8LPF0GeneID:843733Genevisible:Q8LPF0
GO:GO:0001129GO:GO:0003682GO:GO:0005669GO:GO:0008237GO:GO:0008270GO:GO:0009506GO:GO:0043565
GO:GO:0044212GO:GO:0045944GO:GO:0051123hmmpanther:PTHR15137HOGENOM:HOG000084774InParanoid:Q8LPF0IntAct:Q8LPF0
InterPro:IPR014782InterPro:IPR016024iPTMnet:Q8LPF0KEGG:ath:AT1G73960KO:K03128ncoils:CoilOMA:VFLPPEM
PaxDb:Q8LPF0Pfam:PF01433Pfam:Q8LPF0PhylomeDB:Q8LPF0PIR:C96767PRIDE:Q8LPF0PRO:PR:Q8LPF0
ProteinModelPortal:Q8LPF0Proteomes:UP000006548Reactome:R-ATH-674695Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042
RefSeq:NP_001031279.1RefSeq:NP_177536.2SMR:Q8LPF0STRING:3702.AT1G73960.1SUPFAM:0038696SUPFAM:SSF48371SUPFAM:SSF55486
TAIR:AT1G73960tair10-symbols:TAF2UniGene:At.21897UniProt:Q8LPF0
Coordinates (TAIR10) chr1:-:27805173..27814433
Molecular Weight (calculated) 155756.00 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.36
Length 1390 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)