suba logo
AT1G73930.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.953
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 290 Blast hits to 263 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 30; Plants - 49; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP3FeggNOG:KOG2432EMBL:AC016662EMBL:AK317311EMBL:CP002684EnsemblPlants:AT1G73930EnsemblPlants:AT1G73930.1
EnsemblPlants:AT1G73930.2entrez:843730GeneID:843730Gramene:AT1G73930.1Gramene:AT1G73930.2hmmpanther:PTHR13677hmmpanther:PTHR13677:SF0
InterPro:IPR024224KEGG:ath:AT1G73930ncoils:CoilOMA:DIFRCFCPANTHER:PTHR13677Pfam:PF08616PhylomeDB:Q9C9B4
PIR:H96766Proteomes:UP000006548RefSeq:NP_001031278.1RefSeq:NP_177533.1TAIR:AT1G73930UniGene:At.43715UniProt:Q9C9B4
Coordinates (TAIR10) chr1:-:27795347..27797534
Molecular Weight (calculated) 70389.80 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.26
Length 623 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRSPSFSVK PELSIKPDPE SLKRWIHAFC IMRFDLEQGQ LLEECYPPDC LSQEEEIEVS FNSFPDSVSQ HHNRSSIHDC IFFFRFRRPK KNTEERDGSE
101: RYLYGYVFNR QRHDERLKRG GEQKSVVILS HTPYSSVFRP LLQIIGPLYF DVGNKAIEHI AGYVSMWPAP VPGKLMELPI GNAMLKVNLP PAHSLPLENG
201: ILYEESASSM APLLPTNQSV PQGLFHDADL FGIYRGLLLQ LWTLWELLLI GEPILIIAPT PPQCSEAVAC LVSLVAPLFC SVDFRPYFTI HDPGFARLNS
301: LREGDTFPPM VLGVTNIFFL KALRNIPHVV SVGTPAPNSN RVAFTSRSAG KLSVKPEGLG VQQLSLRRFS PTNLLNAVKL RRDGPLCLMT EHKEAVWTTY
401: SAVTKPDTSI LNRLIDAGMS PRVEESMSVV NNEILRRHFL ELTTNFLAPF GPYFQVNAPS DGSSPYVTPP ALPSFGADEF LSNLSGRGVG KFLSKRMKSN
501: WPDLYRRFLR GPNFSPWFQR RRAVAEQEQR RLWRLARMKT DMRQITSQMN ELEAVDSFNA IEKHISEEVK SLESGGGADS EGTFQKLKKD LQAVFSVLPK
601: DMQQLLLLNP QRASLLQDPS ELQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)