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AT1G73870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G25440.1); Has 3347 Blast hits to 2327 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3259; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
BioGrid:28942eggNOG:COG5641eggNOG:KOG1601EMBL:AC016662EMBL:BT015740EMBL:BT020183EMBL:CP002684
EnsemblPlants:AT1G73870EnsemblPlants:AT1G73870.1entrez:843723GeneID:843723Genevisible:Q9C9A9GO:GO:0003700GO:GO:0005730
GO:GO:0006355GO:GO:0008270GO:GO:0009641GO:GO:0010223GO:GO:0045893Gramene:AT1G73870.1hmmpanther:PTHR31874
hmmpanther:PTHR31874:SF1HOGENOM:HOG000240360InParanoid:Q9C9A9IntAct:Q9C9A9InterPro:IPR000315InterPro:IPR010402KEGG:ath:AT1G73870
PaxDb:Q9C9A9Pfam:PF00643Pfam:PF06203Pfam:Q9C9A9Pfscan:PS50119Pfscan:PS51017PhylomeDB:Q9C9A9
PIR:C96766PRIDE:Q9C9A9PRO:PR:Q9C9A9PROSITE:PS50119PROSITE:PS51017ProteinModelPortal:Q9C9A9Proteomes:UP000006548
RefSeq:NP_177528.1SMART:SM00336STRING:3702.AT1G73870.1TAIR:AT1G73870UniGene:At.34943UniProt:Q9C9A9
Coordinates (TAIR10) chr1:+:27779214..27780522
Molecular Weight (calculated) 44020.50 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.70
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVDVESRTA SVTGEKMAAR GCDACMKRSR ASWYCPADDA FLCQSCDASI HSANHLAKRH ERVRLQSSSP TETADKTTSV WYEGFRRKAR TPRSKSCAFE
101: KLLQIESNDP LVPELGGDED DGFFSFSSVE ETEESLNCCV PVFDPFSDML IDDINGFCLV PDEVNNTTTN GELGEVEKAI MDDEGFMGFV PLDMDLEDLT
201: MDVESLLEEE QLCLGFKEPN DVGVIKEENK VGFEINCKDL KRVKDEDEEE EEAKCENGGS KDSDREASND KDRKTSLFLR LDYGAVISAW DNHGSPWKTG
301: IKPECMLGGN TCLPHVVGGY EKLMSSDGSV TRQQGRDGGG SDGEREARVL RYKEKRRTRL FSKKIRYEVR KLNAEQRPRI KGRFVKRTSL LT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)