AT1G73860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.831 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: petal, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G18410.1); Has 138507 Blast hits to 76202 proteins in 2961 species: Archae - 1220; Bacteria - 20098; Metazoa - 63175; Fungi - 11698; Plants - 7059; Viruses - 430; Other Eukaryotes - 34827 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27771188..27775977 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115136.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.45 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1025 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNPMRDQPGS PYGDSTPRSP FSPFSPLSVD DRHRNHADTK TPRSPFSPFS PLSGDERHKS LAESKFQQAL ASSGQLDPLS PGSMHHGGHK FHEVFQMKQG 0101: RYDLQASKIS EMMKSSSLDN APTQSLLSVL NGILDESIER KNGEIPQRVA CLLRKVVQEI ERRISTQAEH LRTQNNIFKT REEKYQSRIN VLEALASGTG 0201: VEHEIATQQL RQIETEKSMW EEKKKHEEED MVKLMKQNDQ HNLEISALKQ ELETTKRKYE QQYSQIESQT KTEKSKWEEQ KKNEEEDMDK LLKENDQFNL 0301: QISALRQELE TTRKAYEQQC SQMESQTMVA TTGLESRLKE LEQEGKVVNT AKNALEERVK ELEQMGKEAH SAKNALEEKI KQLQQMEKET KTANTSLEGK 0401: IQELEQNLVM WKTKVREMEK KSESNHQRWS QKELSYKSFI DNQSQALLEL RSYSRSIKQE ILKVQENYTD QFSQLGKKLI ELSNAAENYH AVLTENRKLF 0501: NELQELKGNI RVFCRVRPFL PAQGAANTVV EYVGEDGELV VTNPTRPGKD GLRQFKFNKV YSPTASQADV FSDIRPLVRS VLDGYNVCIF AYGQTGSGKT 0601: YTMTGPDGSS EEDWGVNYRA LNDLFKISQS RKGNISYEVG VQMVEIYNEQ VLDLLSDDNS QKKTLGILST TQQNGLAVPD ASMYPVTSTS DVITLMDIGL 0701: QNRAVGSTAL NERSSRSHSI VTVHVRGKDL KTGSVLYGNL HLVDLAGSER VDRSEVTGDR LREAQHINKS LSSLGDVIFS LASKSSHVPY RNSKLTQLLQ 0801: TSLGGRAKTL MFVQLNPDAT SYSESMSTLK FAERVSGVEL GAAKTSKEGK DVRDLMEQLA SLKDTIARKD EEIERLQHQP QRLQKSMMRR KSIGHTDDIN 0901: SDTGEYSSQS RYSVTDGESL ASSAEAEYDE RLSEITSDAA SMGTQGSIDV TKRPPRISDR AKSVTAKSST SVTRPLDKLR KVATRTTSTV AKVTGLTSSS 1001: KGLASSSIKK TGSTSSLAKS SKRWA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)