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AT1G73850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.638
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1666)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT3G20260.1); Has 1252 Blast hits to 1091 proteins in 184 species: Archae - 4; Bacteria - 49; Metazoa - 367; Fungi - 151; Plants - 117; Viruses - 41; Other Eukaryotes - 523 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II5PeggNOG:ENOG410YFFWEMBL:CP002684EnsemblPlants:AT1G73850
EnsemblPlants:AT1G73850.1entrez:843721GeneID:843721GO:GO:0003735
GO:GO:0005840GO:GO:0006412GO:GO:0016021Gramene:AT1G73850.1
hmmpanther:PTHR10759hmmpanther:PTHR10759:SF6InParanoid:F4HS08InterPro:IPR008195
InterPro:IPR012870iPTMnet:F4HS08KEGG:ath:AT1G73850OMA:MEECIRT
PANTHER:PTHR10759PaxDb:F4HS08Pfam:PF07891PRIDE:F4HS08
ProteinModelPortal:F4HS08Proteomes:UP000006548RefSeq:NP_177526.3STRING:3702.AT1G73850.1
TAIR:AT1G73850TMHMM:TMhelixUniGene:At.34946UniProt:F4HS08
Coordinates (TAIR10) chr1:+:27767375..27770386
Molecular Weight (calculated) 73593.60 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.86
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MQCYTNEEAL ASLFINVSTS FFLLLILLYS AVSLLIKLLH FIGGYPLLQR NEDEYDSAAW YSEEEEEEEE EGEELKMSCN SSYHVISRDP NPDLIADIAD
101: DGESLVFYNN ISQGGVNNQH TKEFNNVYQT HEHEEEEEDD QDSNTSSTEE HFSSANVSPY RSESSIEEED DGVEDLPDDR YDDDDEDEEV GGVSRYDVVE
201: DLVRKQPNTT STRGPSRFQS GLVFNDKSYN AREFVSNGGI KNDVDEIQPS SGFDMREIKA EELEEEEEEE RGQIFGESCT NGSTSKSSSE WRNSVKTDDP
301: FSTSSRRSCP KWESYTVFQK YDEEMTFLTR ISAQKLHEAE SLKSIMVEPR SISERIVHKL SSNGHKKKQK QYPGSNGSRP NPYVELESAY VAQICLTWEA
401: LSWNYKNFER KRSTTQRSFN DVGCPAGIAD QFRTFHILLQ RYVENEPYEH GRRPEIYARM RTLAPKLLLV PEYQDYEEEE EKEDENEEGF RSRISSASFL
501: MIMEECIRTF MNFLQADKEK PCQKIIKAFF GRSKRGPVDP TLVHLMKKVN TKKKTKLKEM RRGGKYMRKK KMSIEEEMEI LMGLIDLKVV SRVLRMNEMN
601: EENLHWCEEK MSKVKIIQGG KVLQRDSTPL FFPPH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)