AT1G73840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Resembles the CstF64 family of RNA processing factors that are conserved between yeast and mammals. In mammals, CstF64 is a component of the CstF complex which is required for mRNA 3'end formation along with other factors. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ENHANCED SILENCING PHENOTYPE 1 (ESP1); BEST Arabidopsis thaliana protein match is: cleavage stimulating factor 64 (TAIR:AT1G71800.1); Has 17088 Blast hits to 12613 proteins in 677 species: Archae - 8; Bacteria - 992; Metazoa - 8093; Fungi - 4211; Plants - 1941; Viruses - 196; Other Eukaryotes - 1647 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27763937..27766328 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41832.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.12 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||
| Length | 388 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGKQIGGDG GLPANLAGMT KSQLYDIMSQ MKTLIDQNHQ QAREILIRNP LLTKALFQAQ IMLGMVQPPQ VTPKVEPQAV QQPQQSHQSI PPKPNVQAHM 101: SSFQGGGSVH EPANTMQPQA PIRKHPTPQP MPMPPPPPSV SANSAQSQPR FSHPQRQGHL NPAVTSMSHP QSSQVQNAPP PASHHPTSQQ PPFHHLDIPA 201: SSTQLQQQPM HSGGGPHVAQ QQSRPYHHQY GQAQTGPNTG FQHHGAPTQH LSQPMYHSGN RPPASGGPQF PQGQPHLPSQ PTYQGGGQYR GDYNNNQLAG 301: LMAQDRGPSW MAGQSESSNI THLPGLGPVP PPSQVGPGGG PPPRPAPISA EMEKALLQQV MSLTPEQINL LPPEQRNQVL QLQQILRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)