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AT1G73640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23532067 (2013): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A6A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A6A (RABA6a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A6B (TAIR:AT1G18200.1); Has 27212 Blast hits to 27171 proteins in 728 species: Archae - 24; Bacteria - 131; Metazoa - 14579; Fungi - 3674; Plants - 3000; Viruses - 20; Other Eukaryotes - 5784 (source: NCBI BLink).
Protein Annotations
BioGrid:28917eggNOG:COG1100eggNOG:KOG0087EMBL:AC012679EMBL:AY084805EMBL:CP002684EnsemblPlants:AT1G73640
EnsemblPlants:AT1G73640.1entrez:843698Gene3D:3.40.50.300GeneID:843698Genevisible:Q9C9U7GO:GO:0005525GO:GO:0005622
GO:GO:0005886GO:GO:0007264GO:GO:0015031Gramene:AT1G73640.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF486HOGENOM:HOG000233968
InParanoid:Q9C9U7InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT1G73640KO:K07976OMA:EFAYRNV
PaxDb:Q9C9U7Pfam:PF00071Pfam:Q9C9U7Pfscan:PS51419PhylomeDB:Q9C9U7PIR:D96763PRIDE:Q9C9U7
PRO:PR:Q9C9U7PROSITE:PS51419ProteinModelPortal:Q9C9U7Proteomes:UP000006548RefSeq:NP_177505.1SMR:Q9C9U7STRING:3702.AT1G73640.1
SUPFAM:SSF52540TAIR:AT1G73640tair10-symbols:AtRABA6atair10-symbols:RABA6aTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.17986
UniGene:At.34968UniProt:Q9C9U7
Coordinates (TAIR10) chr1:+:27687033..27687987
Molecular Weight (calculated) 26040.70 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.28
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEDTYEEEC DYLFKAVLIG DSAVGKSNLL SRFSKDEFRF DSKPTIGVEF AYRNVHVGDK IIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRTT
101: FDNIKKWLFE LRDFANPETV VVLVGNKSDL RQSREVEEDE GKTLAESEGL YFLETSALEN VNVEEAFLVM IGRIHEVVTQ RIASENKSNG AATPHINGNG
201: NGTVLPVGKE IVNIHEVTAT QPLLSSSSNC CFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)