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AT1G73430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sec34-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sec34-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: chloroplast, membrane, cis-Golgi network; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec34-like protein (InterPro:IPR007265); Has 353 Blast hits to 340 proteins in 172 species: Archae - 0; Bacteria - 4; Metazoa - 117; Fungi - 139; Plants - 43; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNXHeggNOG:KOG2604EMBL:CP002684EnsemblPlants:AT1G73430EnsemblPlants:AT1G73430.1EnsemblPlants:AT1G73430.2entrez:843677
GeneID:843677GO:GO:0005801GO:GO:0005829GO:GO:0006886GO:GO:0016020Gramene:AT1G73430.1Gramene:AT1G73430.2
hmmpanther:PTHR13302InterPro:IPR007265InterPro:IPR016159KEGG:ath:AT1G73430OMA:KIPEYQQPANTHER:PTHR13302Pfam:PF04136
Proteomes:UP000006548Reactome:R-ATH-6807878RefSeq:NP_001117595.1RefSeq:NP_177485.2STRING:3702.AT1G73430.1SUPFAM:SSF74788TAIR:AT1G73430
UniGene:At.16899UniProt:F4HQ84
Coordinates (TAIR10) chr1:+:27604096..27610829
Molecular Weight (calculated) 88614.20 Da
IEP (calculated) 6.22
GRAVY (calculated) -0.23
Length 784 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKAASSSS LPKSGAISKG YNFASTWEQS APLTEQQQAA IVSLSHAVAE RPFPANLVHE HVHRPENGLS VSVEDTHLGD SGAIEAVLVN TNQFYKWFTD
101: LESAMKSETE EKYRHYVSTL TERIQTCDNI LHQVDETLDL FNELQLQHQG VTTKTKTLHD ACDRLLMEKQ KLMEFAEALR SKLNYFDELE NVSSNFYSPN
201: MNVSNSNFLP LLKRLDECIS YIEDNPQYAE SSVYLLKFRQ LQSRALGMIR TYILAVLKTA ASQVQAAFRG TGGNKTSVSE GVEASVIYVR FKAAANELKP
301: VLEEIESRSA RKEYVQILAE CHRLYCEQRL SLVKGIVHQR VSDFAKKEAL PSLTRSGCAY LMQVCHMEHQ LFTHFFPASS EEVSSLAPLV DPLSTYLYDI
401: LRPKLIHEAN IDLLCELVHI LKVEVLGDQS ARQSEPLAGL RPTLQRILAD VNERLTFRAR TYIRDEIANY TPSDEDLDYP AKLEGSPNTT SETDLRDDEN
501: ADVFKTWYPP LEKTLSCLSK LYRCLEQAVF TGLAQEAVEV CSLSIQKASK LIIKRSTTMD GQLFLIKHLL ILREQIAPFD IEFSVTHKEL DFSHLLEHLR
601: RILRGQASLF DWSRSTSLAR TLSPRVLESQ IDAKKELEKC LKTTCEEFIM SVTKLVVDPM LSFVTKVTAI KVALSSGTQN HKVDSVMAKP LKEQAFATPD
701: KVVELVQKVY AAIQQELLPI LAKMKLYLQN PSTRTILFKP IKTNIVEAHT QVESLLKAEY SAEEQANINM ISIQDLQTQL DNFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)