suba logo
AT1G73230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nascent polypeptide-associated complex NAC
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nascent polypeptide-associated complex NAC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: basic transcription factor 3 (TAIR:AT1G17880.1); Has 832 Blast hits to 832 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 423; Fungi - 174; Plants - 145; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JBGeggNOG:KOG2240EMBL:AC010556EMBL:AF370253
EMBL:AK317769EMBL:AY063069EMBL:AY084841EMBL:CP002684
EnsemblPlants:AT1G73230EnsemblPlants:AT1G73230.1entrez:843657GeneID:843657
GO:GO:0006351GO:GO:0006355GO:GO:0009651Gramene:AT1G73230.1
hmmpanther:PTHR10351HOGENOM:HOG000261245IntAct:Q9CAT7InterPro:IPR002715
KEGG:ath:AT1G73230KO:K01527OMA:FAITGHSPaxDb:Q9CAT7
Pfam:PF01849Pfscan:PS51151PhylomeDB:Q9CAT7PIR:D96758
PROSITE:PS51151ProteinModelPortal:Q9CAT7Proteomes:UP000006548RefSeq:NP_177466.1
SMART:SM01407SMR:Q9CAT7STRING:3702.AT1G73230.1TAIR:AT1G73230
UniGene:At.48369UniGene:At.71027UniProt:Q9CAT7
Coordinates (TAIR10) chr1:-:27540506..27541364
Molecular Weight (calculated) 18005.40 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.56
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRVGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)