AT1G73110.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, ATP binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: rubisco activase (TAIR:AT2G39730.1); Has 469 Blast hits to 469 proteins in 170 species: Archae - 27; Bacteria - 71; Metazoa - 17; Fungi - 60; Plants - 256; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:27494344..27496844 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48327.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||
| Length | 432 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALANISLRF KFPPLQSSSS SSSSFNATLI NTRKLSSIVC SKPSSNDGGK VANDDGGAKP RKKLSEQSSW EVKDSEGKDY LYRLGAESDN VNIAVGARSG 101: MIDDVFIGDF LGKDSDIVFD YRQKATRSFE HLQGDYYIAP SFLDKVAVHI VKNYLAPSLN IKIPLILGIW GGKGQGKTFQ TELIFKTMGV EPVIMSAGEL 201: ESDRAGEPGR LIRDRYRTAS QVIQNQGKMS VLMINDIDAG LGRFGETQMT VNNQIVVGTL MNLADNPTRV SVGQEWREAD MVNRVPLIVT GNDFSTLYAP 301: LIREGRMEKF YWQPTREDIV NIVSRMYEKD GISRKDVISI VDKFPNQALD FYGALRSRTY DRSILKWVDE AGGMETLGKV LLRRKKTQEV PQFTAPEQTV 401: EALLESGYSL INEQKLIMET KLSKEYMKNM DD |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)