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AT1G73060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Low PSII Accumulation 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Low PSII Accumulation 3 (LPA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1995) (TAIR:AT5G48790.1); Has 97 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:28856eggNOG:ENOG410IES3eggNOG:ENOG410XSNMEMBL:AC008017EMBL:AY084869EMBL:BT002009EMBL:BT008843
EMBL:CP002684EnsemblPlants:AT1G73060EnsemblPlants:AT1G73060.1entrez:843637GeneID:843637Genevisible:Q8H0W0GO:GO:0009507
GO:GO:0009535GO:GO:0009570GO:GO:0009571GO:GO:0009735GO:GO:0010207Gramene:AT1G73060.1hmmpanther:PTHR34051
hmmpanther:PTHR34051:SF2HOGENOM:HOG000264419InParanoid:Q8H0W0InterPro:IPR018962iPTMnet:Q8H0W0KEGG:ath:AT1G73060OMA:DENEGRW
PaxDb:Q8H0W0Pfam:PF09353Pfam:Q8H0W0PhylomeDB:Q8H0W0PIR:B96756PRIDE:Q8H0W0PRO:PR:Q8H0W0
Proteomes:UP000006548RefSeq:NP_565054.1STRING:3702.AT1G73060.1TAIR:AT1G73060tair10-symbols:LPA3UniGene:At.11684UniGene:At.67890
UniProt:Q8H0W0
Coordinates (TAIR10) chr1:+:27479027..27481258
Molecular Weight (calculated) 40031.30 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.23
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMAIAMLPA LFSSPSILTS RIRCGATANS GGAISSTSSN SDPRRGVPLY KPKSYEVLAT DAANSLAFAL QDSKSRLEID FPPLPSSISS YKGSSDDFID
101: ANIQLAVTVV RKLQEKIETR ACIVFPDKPE KRRASQRFKA AFDSVDGISI GSLDDIPGTS VTNFFRSIRS TLDFDFEDEN EGTWEPKEPP TLYIFINCST
201: RELSFIEKFV ETFASSTPAL LFNLELDTLR ADLGLLGFPP KDLHYRFLSQ FIPVFYIRTR EYSKTVAVAP FVLNYNGALF RQYPGPWQVM LKQTDGSFAC
301: VAESPTRFTL GETKEELLQV LGLQEEKGSS LEFLRRGYKS ATWWEEDVEL EASSNWRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)