AT1G73060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Low PSII Accumulation 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Low PSII Accumulation 3 (LPA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1995) (TAIR:AT5G48790.1); Has 97 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27479027..27481258 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40031.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 358 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMAIAMLPA LFSSPSILTS RIRCGATANS GGAISSTSSN SDPRRGVPLY KPKSYEVLAT DAANSLAFAL QDSKSRLEID FPPLPSSISS YKGSSDDFID 101: ANIQLAVTVV RKLQEKIETR ACIVFPDKPE KRRASQRFKA AFDSVDGISI GSLDDIPGTS VTNFFRSIRS TLDFDFEDEN EGTWEPKEPP TLYIFINCST 201: RELSFIEKFV ETFASSTPAL LFNLELDTLR ADLGLLGFPP KDLHYRFLSQ FIPVFYIRTR EYSKTVAVAP FVLNYNGALF RQYPGPWQVM LKQTDGSFAC 301: VAESPTRFTL GETKEELLQV LGLQEEKGSS LEFLRRGYKS ATWWEEDVEL EASSNWRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)